Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116689476

Identifier: 116689476

GI number: 116689476

Start: 1608831

End: 1609223

Strand: Reverse

Name: 116689476

Synonym: Bcen2424_1454

Alternate gene names: NA

Gene position: 1609223-1608831 (Counterclockwise)

Preceding gene: 116689477

Following gene: 116689475

Centisome position: 46.19

GC content: 72.77

Gene sequence:

>393_bases
ATGAACGCCCCCGCCCGCCCCGCCATCGCGGCCCGGCCGCGCTACGCGCTGGCCGCCGCCGCGTGTCTCGTCGCGCTGAT
CGCGCTGTCGCTCGCGTGGGAGCTGTGGCTCGCGCCGCTGCGCCCGGGCGGCTCCGCGCTGATGCTCAAGGCCGTGCCGC
TCGCGCTCGCGCTGCCCGGCGTCTGGCGGCGTAACATCTATACGATGCAGTGGGCGAGCATGCTGATCCTCGTCTATCTC
GCCGAAGGCATCGTGCGCGGCATGTCCGATCGCGGGCTGTCCGCGACGCTCGGCTGGTGCGAGGCCGCGCTTGCCGTCGG
CTTCTTCGTGGCGGCGCTGGCTTACGTCGCGCCGTTCAAGCGCGCGGCGAAAAAACCGCGCGCCACGTCCTGA

Upstream 100 bases:

>100_bases
CCGGGCTGTCGGCGGACGAGAAGGCGCTCGCGGCCGCGCTCGGCGTACGGCTCGCCCGCGCCGCCGCGGCCCTCGCCAGC
GCCCAGGCCGCCGAGGCGGC

Downstream 100 bases:

>100_bases
CCCTTACGCGACAAGGTGATGATGTCCTCCGAAGCTTTCGTTTCCGCGTGCCGCGACGCGATCGGCGCCGATCACGTCCT
GACCGATCCGCACGATACCG

Product: membrane protein

Products: NA

Alternate protein names: Transmembrane Lipoprotein

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPGVWRRNIYTMQWASMLILVYL
AEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFKRAAKKPRATS

Sequences:

>Translated_130_residues
MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPGVWRRNIYTMQWASMLILVYL
AEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFKRAAKKPRATS
>Mature_130_residues
MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPGVWRRNIYTMQWASMLILVYL
AEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFKRAAKKPRATS

Specific function: Unknown

COG id: COG3308

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13821; Mature: 13821

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
VWRRNIYTMQWASMLILVYLAEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKKPRATS
HHHCCCCCCC
>Mature Secondary Structure
MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
VWRRNIYTMQWASMLILVYLAEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKKPRATS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA