Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689476
Identifier: 116689476
GI number: 116689476
Start: 1608831
End: 1609223
Strand: Reverse
Name: 116689476
Synonym: Bcen2424_1454
Alternate gene names: NA
Gene position: 1609223-1608831 (Counterclockwise)
Preceding gene: 116689477
Following gene: 116689475
Centisome position: 46.19
GC content: 72.77
Gene sequence:
>393_bases ATGAACGCCCCCGCCCGCCCCGCCATCGCGGCCCGGCCGCGCTACGCGCTGGCCGCCGCCGCGTGTCTCGTCGCGCTGAT CGCGCTGTCGCTCGCGTGGGAGCTGTGGCTCGCGCCGCTGCGCCCGGGCGGCTCCGCGCTGATGCTCAAGGCCGTGCCGC TCGCGCTCGCGCTGCCCGGCGTCTGGCGGCGTAACATCTATACGATGCAGTGGGCGAGCATGCTGATCCTCGTCTATCTC GCCGAAGGCATCGTGCGCGGCATGTCCGATCGCGGGCTGTCCGCGACGCTCGGCTGGTGCGAGGCCGCGCTTGCCGTCGG CTTCTTCGTGGCGGCGCTGGCTTACGTCGCGCCGTTCAAGCGCGCGGCGAAAAAACCGCGCGCCACGTCCTGA
Upstream 100 bases:
>100_bases CCGGGCTGTCGGCGGACGAGAAGGCGCTCGCGGCCGCGCTCGGCGTACGGCTCGCCCGCGCCGCCGCGGCCCTCGCCAGC GCCCAGGCCGCCGAGGCGGC
Downstream 100 bases:
>100_bases CCCTTACGCGACAAGGTGATGATGTCCTCCGAAGCTTTCGTTTCCGCGTGCCGCGACGCGATCGGCGCCGATCACGTCCT GACCGATCCGCACGATACCG
Product: membrane protein
Products: NA
Alternate protein names: Transmembrane Lipoprotein
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPGVWRRNIYTMQWASMLILVYL AEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFKRAAKKPRATS
Sequences:
>Translated_130_residues MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPGVWRRNIYTMQWASMLILVYL AEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFKRAAKKPRATS >Mature_130_residues MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPGVWRRNIYTMQWASMLILVYL AEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFKRAAKKPRATS
Specific function: Unknown
COG id: COG3308
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13821; Mature: 13821
Theoretical pI: Translated: 11.19; Mature: 11.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC VWRRNIYTMQWASMLILVYLAEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RAAKKPRATS HHHCCCCCCC >Mature Secondary Structure MNAPARPAIAARPRYALAAAACLVALIALSLAWELWLAPLRPGGSALMLKAVPLALALPG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC VWRRNIYTMQWASMLILVYLAEGIVRGMSDRGLSATLGWCEAALAVGFFVAALAYVAPFK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RAAKKPRATS HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA