| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is iolC1 [H]
Identifier: 116689445
GI number: 116689445
Start: 1569201
End: 1571156
Strand: Reverse
Name: iolC1 [H]
Synonym: Bcen2424_1423
Alternate gene names: 116689445
Gene position: 1571156-1569201 (Counterclockwise)
Preceding gene: 116689454
Following gene: 116689444
Centisome position: 45.1
GC content: 70.6
Gene sequence:
>1956_bases ATGAGCCTGCTGAACTTTCCGAGTGACCGCCCCATCGATCTCGCCTGCCTCGGCCGCGTGGCCGTGGATCTCTATGCACA GCAGTACGGCAGCCGCCTCGAGGACGCGCGCAGCTTCCAGATGTATCTCGGCGGCTCGTCGGGCAATGTCGCGTTCGGCG TCGCGCGGCTCGGGTTGAAGACCGCGATGATTTCGCGCGTCGGCGACGAGCAGATGGGCCGCTTCCTGCGCGAGACGCTC GAGCGCGAAGGCTGCGACACGAGCCAGCTGCAGACCGACCGCGAGCGCCTCACCGCGCTGGTGCTGCTCGGGCTGAAGGA TCGCGATACGTTCCCGCTGCTGTTCGTGCGCGAGAACTGCGCGGACATGGCCGTGCGCGCCGACGAGATCAGCGAGGATT TCATCGCCGGTTGCCGCGCACTGGCGATCACCGGCACGCATCTGTCGACGCCGGGCACGCGCGAGGCGTCGCTGACTGCG CTCGGCTATGCGCGCCGCCACGGCGCGGTCCGCATCCTCGACATCGACTACCGGCCGGTGCTGTGGGGACTGACCGCGCG CGGCGCCGGCGAAAACCGCTACGTGCCCGACGCGCAGGTGACGCGGCAACTGCAGCAGGTACTCGGCGAATTCGACCTGC TGGTCGGCACCGAGGAGGAATTCCTGATCGCGGGCGGCGTGCCGCACGACCTGATCGGGTCGTTGCAGGCGGTGCGCGCG ATCACGAACGCGACGCTGGTCGTCAAGCGCGGCGCGCTCGGCTGCTGCGTGATCGAAGGCGACATTCCGGCCGGCATCGA CGCTGCGCCGACCTTTCTCGGCGAGCGCGTCGAAGTGCTCAACGTGCTCGGCGCGGGCGATGCGTTCCTGTCCGGCCTGC TGTCGGGGCTGCTGCGCGGGCGCGACTGGGCCGAATCGACGCGCATCGCGAACGCGTGCGGCGCGATCGTCGTGTCGCGC CATGCGTGCTCGGCCGCGATGCCGACGCCGGCCGAACTCGCGCACTGGTTCGACGGCAGCCGCAATCCGCAGGTCGACGC CGACCGCACGCTCGCGCATCTGCATCGCGTGACGGTGCCACGCCGCGAATGGGACGACCTGTGCGTGATGGCGTTCGACC ATCGCAGCCAGTTCTACGAGCTGGCGGTGCAGGCCGGCGCGGACGAAGCGCGGATCAAGACGCTGAAGCGCCTGCTCGTG CGTGCGGTCGAACAGGTCGAGCGCGATCGCGGCATCGCCGGCCACGTCGGCGTGCTGATCGACGGTGGCGCGTACGGCAG CGACGCGCTCGCGTCGGCCACCGGGCGCGGCTGGTGGGTCGGCCGCCCGGTCGAGCTGCCGGGCTCGCGGCCGCTGCGCT TCGACGACACGCGCTCGGTCGGCTCGTCGCTCACGCACTGGCCGACCGAACAGGTCGTGAAGTGCCTCGTCCACTATCAC CCCGACGACCCCGTCGACCTGCGCGTCGAGCAGGAGCAGCGCGTGCTGGAACTGTGGGAAGCCACGCGCGCGAGCGGCAA CGAGCTGCTGCTGGAAATGATTCCGCCGCGCGCGGTCACGCCGGCCGGCACCGAGGACGACGCGGTGCTGCGCACGATCG CGCGCTTCTACAACCTCGGCGTGAAGCCCGAATGGTGGAAGCTCACGCCGCTCACCGCCGACGGCTGGGCGCGGCTCGCC GCGCTGATCGCGGAGCGCGATCCGCACTGCCGCGGCGCGGTGATCCTCGGGCTGAACCAGCCGCTGCAATACCTCGTCGA CAGCTTCCGCTCGGCGACCAACCCGATCGTCAAGGGCTTCATGGTCGGGCGCACGCTGTGGGCCGATGCGTCGCTGAACT GGTTCGCGGGCCGGATCGACGATCAGGCGCTGATCGACGAAGTGGCCGGCAACTTCGCGCAACTGGTCGACGCGTGGCTG GGCCGCCGTACCGCCGCGCGCGCCGCCGCGGCCTGA
Upstream 100 bases:
>100_bases AGCCTCATGTCGTGCGGCATAGGCCGCGGACAGTCGCCACTGGATCGGTCCCCTAATCTGCCGGCAGCGCCGAACGCCGG CCGCGAGCGTGACACGTGAT
Downstream 100 bases:
>100_bases TGCCCGTGTTCGTGACGACCACCCGACTTCTCTCTATCGACCGACGATGACCACCACCGTAAGACTGACCGTCAGCCAGG CCCTCGTGCGCTACCTGGCC
Product: ribokinase-like domain-containing protein
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase 1; DKG kinase 1 [H]
Number of amino acids: Translated: 651; Mature: 650
Protein sequence:
>651_residues MSLLNFPSDRPIDLACLGRVAVDLYAQQYGSRLEDARSFQMYLGGSSGNVAFGVARLGLKTAMISRVGDEQMGRFLRETL EREGCDTSQLQTDRERLTALVLLGLKDRDTFPLLFVRENCADMAVRADEISEDFIAGCRALAITGTHLSTPGTREASLTA LGYARRHGAVRILDIDYRPVLWGLTARGAGENRYVPDAQVTRQLQQVLGEFDLLVGTEEEFLIAGGVPHDLIGSLQAVRA ITNATLVVKRGALGCCVIEGDIPAGIDAAPTFLGERVEVLNVLGAGDAFLSGLLSGLLRGRDWAESTRIANACGAIVVSR HACSAAMPTPAELAHWFDGSRNPQVDADRTLAHLHRVTVPRREWDDLCVMAFDHRSQFYELAVQAGADEARIKTLKRLLV RAVEQVERDRGIAGHVGVLIDGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSSLTHWPTEQVVKCLVHYH PDDPVDLRVEQEQRVLELWEATRASGNELLLEMIPPRAVTPAGTEDDAVLRTIARFYNLGVKPEWWKLTPLTADGWARLA ALIAERDPHCRGAVILGLNQPLQYLVDSFRSATNPIVKGFMVGRTLWADASLNWFAGRIDDQALIDEVAGNFAQLVDAWL GRRTAARAAAA
Sequences:
>Translated_651_residues MSLLNFPSDRPIDLACLGRVAVDLYAQQYGSRLEDARSFQMYLGGSSGNVAFGVARLGLKTAMISRVGDEQMGRFLRETL EREGCDTSQLQTDRERLTALVLLGLKDRDTFPLLFVRENCADMAVRADEISEDFIAGCRALAITGTHLSTPGTREASLTA LGYARRHGAVRILDIDYRPVLWGLTARGAGENRYVPDAQVTRQLQQVLGEFDLLVGTEEEFLIAGGVPHDLIGSLQAVRA ITNATLVVKRGALGCCVIEGDIPAGIDAAPTFLGERVEVLNVLGAGDAFLSGLLSGLLRGRDWAESTRIANACGAIVVSR HACSAAMPTPAELAHWFDGSRNPQVDADRTLAHLHRVTVPRREWDDLCVMAFDHRSQFYELAVQAGADEARIKTLKRLLV RAVEQVERDRGIAGHVGVLIDGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSSLTHWPTEQVVKCLVHYH PDDPVDLRVEQEQRVLELWEATRASGNELLLEMIPPRAVTPAGTEDDAVLRTIARFYNLGVKPEWWKLTPLTADGWARLA ALIAERDPHCRGAVILGLNQPLQYLVDSFRSATNPIVKGFMVGRTLWADASLNWFAGRIDDQALIDEVAGNFAQLVDAWL GRRTAARAAAA >Mature_650_residues SLLNFPSDRPIDLACLGRVAVDLYAQQYGSRLEDARSFQMYLGGSSGNVAFGVARLGLKTAMISRVGDEQMGRFLRETLE REGCDTSQLQTDRERLTALVLLGLKDRDTFPLLFVRENCADMAVRADEISEDFIAGCRALAITGTHLSTPGTREASLTAL GYARRHGAVRILDIDYRPVLWGLTARGAGENRYVPDAQVTRQLQQVLGEFDLLVGTEEEFLIAGGVPHDLIGSLQAVRAI TNATLVVKRGALGCCVIEGDIPAGIDAAPTFLGERVEVLNVLGAGDAFLSGLLSGLLRGRDWAESTRIANACGAIVVSRH ACSAAMPTPAELAHWFDGSRNPQVDADRTLAHLHRVTVPRREWDDLCVMAFDHRSQFYELAVQAGADEARIKTLKRLLVR AVEQVERDRGIAGHVGVLIDGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSSLTHWPTEQVVKCLVHYHP DDPVDLRVEQEQRVLELWEATRASGNELLLEMIPPRAVTPAGTEDDAVLRTIARFYNLGVKPEWWKLTPLTADGWARLAA LIAERDPHCRGAVILGLNQPLQYLVDSFRSATNPIVKGFMVGRTLWADASLNWFAGRIDDQALIDEVAGNFAQLVDAWLG RRTAARAAAA
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 71109; Mature: 70978
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLNFPSDRPIDLACLGRVAVDLYAQQYGSRLEDARSFQMYLGGSSGNVAFGVARLGLK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHH TAMISRVGDEQMGRFLRETLEREGCDTSQLQTDRERLTALVLLGLKDRDTFPLLFVRENC HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCH ADMAVRADEISEDFIAGCRALAITGTHLSTPGTREASLTALGYARRHGAVRILDIDYRPV HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCE LWGLTARGAGENRYVPDAQVTRQLQQVLGEFDLLVGTEEEFLIAGGVPHDLIGSLQAVRA EEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHEEECCCCCEEEECCCCHHHHHHHHHHHH ITNATLVVKRGALGCCVIEGDIPAGIDAAPTFLGERVEVLNVLGAGDAFLSGLLSGLLRG HHCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC RDWAESTRIANACGAIVVSRHACSAAMPTPAELAHWFDGSRNPQVDADRTLAHLHRVTVP CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC RREWDDLCVMAFDHRSQFYELAVQAGADEARIKTLKRLLVRAVEQVERDRGIAGHVGVLI CCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE DGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSSLTHWPTEQVVKCLVHYH ECCCCCCHHHHHCCCCCEECCCCEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCC PDDPVDLRVEQEQRVLELWEATRASGNELLLEMIPPRAVTPAGTEDDAVLRTIARFYNLG CCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC VKPEWWKLTPLTADGWARLAALIAERDPHCRGAVILGLNQPLQYLVDSFRSATNPIVKGF CCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH MVGRTLWADASLNWFAGRIDDQALIDEVAGNFAQLVDAWLGRRTAARAAAA HHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCC >Mature Secondary Structure SLLNFPSDRPIDLACLGRVAVDLYAQQYGSRLEDARSFQMYLGGSSGNVAFGVARLGLK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHH TAMISRVGDEQMGRFLRETLEREGCDTSQLQTDRERLTALVLLGLKDRDTFPLLFVRENC HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCH ADMAVRADEISEDFIAGCRALAITGTHLSTPGTREASLTALGYARRHGAVRILDIDYRPV HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCE LWGLTARGAGENRYVPDAQVTRQLQQVLGEFDLLVGTEEEFLIAGGVPHDLIGSLQAVRA EEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHEEECCCCCEEEECCCCHHHHHHHHHHHH ITNATLVVKRGALGCCVIEGDIPAGIDAAPTFLGERVEVLNVLGAGDAFLSGLLSGLLRG HHCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC RDWAESTRIANACGAIVVSRHACSAAMPTPAELAHWFDGSRNPQVDADRTLAHLHRVTVP CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC RREWDDLCVMAFDHRSQFYELAVQAGADEARIKTLKRLLVRAVEQVERDRGIAGHVGVLI CCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE DGGAYGSDALASATGRGWWVGRPVELPGSRPLRFDDTRSVGSSLTHWPTEQVVKCLVHYH ECCCCCCHHHHHCCCCCEECCCCEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCC PDDPVDLRVEQEQRVLELWEATRASGNELLLEMIPPRAVTPAGTEDDAVLRTIARFYNLG CCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC VKPEWWKLTPLTADGWARLAALIAERDPHCRGAVILGLNQPLQYLVDSFRSATNPIVKGF CCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH MVGRTLWADASLNWFAGRIDDQALIDEVAGNFAQLVDAWLGRRTAARAAAA HHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA