| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689422
Identifier: 116689422
GI number: 116689422
Start: 1543459
End: 1544997
Strand: Direct
Name: 116689422
Synonym: Bcen2424_1400
Alternate gene names: NA
Gene position: 1543459-1544997 (Clockwise)
Preceding gene: 116689421
Following gene: 116689424
Centisome position: 44.3
GC content: 67.84
Gene sequence:
>1539_bases ATGATCGAGCGACGCAGGCGACGCCACGGCCGCCGCGTCGAGCGGGCCGCGCGCGTGTCGATCGTCGCGGGGCTGCTGTT CGCGGGCGCCGACGCGGTGTGCGCGGAAACGGTAACTGCGTCGACTTCGAATTCGACTTCGACGCAAGAACCGGCGCCGG CATCGACCGCGTCATCGGCTTCGGCGCCGGCCTCGACGTCGGCAGCGACCACGGCCTCGACGTGCACCGCCAAACGCCCG ACGGTGCTGTTCAACCGCTGGCAGGAAGACTGGTCGGTGCTCGCGAATCCGTGCGTGCCGCGCGCGCCGCTCGACGGGTT GAAATACCTTCCTCTCGGCAACGATCCGCAATCCTATCTGTCGCTCGGCGTGAACCTGCGCGAGCGTCTCGAGACCAACG ACGCGCCGCTGTTCGGCATCGGCTCCGCGCAATCGGATACGTATCTGATCCAGCGCGTCGAAGTGCATGCCGATGCGCAT CTCGGCCCGCACTGGCAATTCTTCGCGCAGTTGCAGGACGCACGCGCGTTCGGCAAGAACACGGTGTCGCCGGTCGACAG GAACCCGCTCGATCTCGAACAGGCGTTCGCGACCTACACGGGCGCGCTCGGCGGCGGCACGGTCAAGTTCCGCGTCGGCC GGCAGGAGATGGCGTTCGACCTGCAGCGCTTCATCGCCGCGCGCGACGGCCCGAACGTGCGGCTCGCGTTCGATGCGGTG TGGGCCGACTACGAATACGGCAAGTGGCGCTTCATCGGCTATGCGACGCAGCCGGTGCAGAACCGCAACGCGTCCGATTT CGACGACGTGTCGAATCGCGATCTCACGTTCAGCGGCGTGCGCTTCGAGCGGCAGTCGGTCGGGCCGGGCGACCTGTCCG GCTACTGGTCGCGCTACAACCGCCGCGGCGCGCGTTTTCTCGATGCGAGCGGCCCCGAGCATCGCGACGTATGGGACGTT CGCTACACGGGCACGCACGGGCGCTTCGACTGGGATCTCGAAACGATGCTGCAGACCGGCACGGTCGGCAACGCCACGAT CGGCGCGTGGGCCGTCGGTTCGATCGCCGGCTACAGGCTCGACGCGCCGTGGTCGCCGCGCATCGCGCTGCAGGTCGACG CGGCATCGGGCGACCGGCATCTGCACGACGGCCGCGTCGGCACCTTCAATCCGCTGTTTCCGAACGGCTATTACTTCACG CTGGCCGGCTATACGAGTTACGCGAACCTGATTCACGTGAAGCCGTCGGTGACGCTGAAACCGTCGGCGAACCTGTCGCT GCTCGGCGCGCTGGGCTTCCAGTGGCGGGAGACGACCGGCGACGCCGTCTATCAGCAGCCGAACATCCCGGTGCCGGGCA CGGCGGGCAAGGGCGGGTTGTGGACCGGCATGTACGTGCAACTGCGCGCGGACTGGACGATCGCCGCGAACCTGATCGGC GCGATCGAGGCCGTGCATTTCCAGGTCGGCGACGCGATCCGGCAGGCAGGCGGGCACAACGCGGATTACGTCGGCGTCGA GCTGAAGTACGGCTGGTGA
Upstream 100 bases:
>100_bases GCTATGTCGGGTTCCTGGCGCTGCTGGTGCCCGTCGGCGCGCTCGCGATGCTCGCGCTGTGCGCGGCGCCATCAGCCGGC ACCACCACGCAGGAGCGCGC
Downstream 100 bases:
>100_bases CGGCGGCGCGCGGCAACCCGCACGCGACATGAAAAAGGGCAGCCCCGCGGGGCTGCCCTTCGTTCGTCCGGGCCGGCAGT TTGGTCGGCCCGTTCGCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 512; Mature: 512
Protein sequence:
>512_residues MIERRRRRHGRRVERAARVSIVAGLLFAGADAVCAETVTASTSNSTSTQEPAPASTASSASAPASTSAATTASTCTAKRP TVLFNRWQEDWSVLANPCVPRAPLDGLKYLPLGNDPQSYLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHADAH LGPHWQFFAQLQDARAFGKNTVSPVDRNPLDLEQAFATYTGALGGGTVKFRVGRQEMAFDLQRFIAARDGPNVRLAFDAV WADYEYGKWRFIGYATQPVQNRNASDFDDVSNRDLTFSGVRFERQSVGPGDLSGYWSRYNRRGARFLDASGPEHRDVWDV RYTGTHGRFDWDLETMLQTGTVGNATIGAWAVGSIAGYRLDAPWSPRIALQVDAASGDRHLHDGRVGTFNPLFPNGYYFT LAGYTSYANLIHVKPSVTLKPSANLSLLGALGFQWRETTGDAVYQQPNIPVPGTAGKGGLWTGMYVQLRADWTIAANLIG AIEAVHFQVGDAIRQAGGHNADYVGVELKYGW
Sequences:
>Translated_512_residues MIERRRRRHGRRVERAARVSIVAGLLFAGADAVCAETVTASTSNSTSTQEPAPASTASSASAPASTSAATTASTCTAKRP TVLFNRWQEDWSVLANPCVPRAPLDGLKYLPLGNDPQSYLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHADAH LGPHWQFFAQLQDARAFGKNTVSPVDRNPLDLEQAFATYTGALGGGTVKFRVGRQEMAFDLQRFIAARDGPNVRLAFDAV WADYEYGKWRFIGYATQPVQNRNASDFDDVSNRDLTFSGVRFERQSVGPGDLSGYWSRYNRRGARFLDASGPEHRDVWDV RYTGTHGRFDWDLETMLQTGTVGNATIGAWAVGSIAGYRLDAPWSPRIALQVDAASGDRHLHDGRVGTFNPLFPNGYYFT LAGYTSYANLIHVKPSVTLKPSANLSLLGALGFQWRETTGDAVYQQPNIPVPGTAGKGGLWTGMYVQLRADWTIAANLIG AIEAVHFQVGDAIRQAGGHNADYVGVELKYGW >Mature_512_residues MIERRRRRHGRRVERAARVSIVAGLLFAGADAVCAETVTASTSNSTSTQEPAPASTASSASAPASTSAATTASTCTAKRP TVLFNRWQEDWSVLANPCVPRAPLDGLKYLPLGNDPQSYLSLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHADAH LGPHWQFFAQLQDARAFGKNTVSPVDRNPLDLEQAFATYTGALGGGTVKFRVGRQEMAFDLQRFIAARDGPNVRLAFDAV WADYEYGKWRFIGYATQPVQNRNASDFDDVSNRDLTFSGVRFERQSVGPGDLSGYWSRYNRRGARFLDASGPEHRDVWDV RYTGTHGRFDWDLETMLQTGTVGNATIGAWAVGSIAGYRLDAPWSPRIALQVDAASGDRHLHDGRVGTFNPLFPNGYYFT LAGYTSYANLIHVKPSVTLKPSANLSLLGALGFQWRETTGDAVYQQPNIPVPGTAGKGGLWTGMYVQLRADWTIAANLIG AIEAVHFQVGDAIRQAGGHNADYVGVELKYGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55972; Mature: 55972
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIERRRRRHGRRVERAARVSIVAGLLFAGADAVCAETVTASTSNSTSTQEPAPASTASSA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCCCCCC SAPASTSAATTASTCTAKRPTVLFNRWQEDWSVLANPCVPRAPLDGLKYLPLGNDPQSYL CCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHH SLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHADAHLGPHWQFFAQLQDARAFGKN HHCCCHHHHHCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC TVSPVDRNPLDLEQAFATYTGALGGGTVKFRVGRQEMAFDLQRFIAARDGPNVRLAFDAV CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEE WADYEYGKWRFIGYATQPVQNRNASDFDDVSNRDLTFSGVRFERQSVGPGDLSGYWSRYN ECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECEEEECCCCCCCCHHHHHHHHC RRGARFLDASGPEHRDVWDVRYTGTHGRFDWDLETMLQTGTVGNATIGAWAVGSIAGYRL CCCCEEECCCCCCCCCEEEEEEECCCCEECCCHHHHHHCCCCCCCEECCEEHHCCCCEEE DAPWSPRIALQVDAASGDRHLHDGRVGTFNPLFPNGYYFTLAGYTSYANLIHVKPSVTLK CCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCEEEC PSANLSLLGALGFQWRETTGDAVYQQPNIPVPGTAGKGGLWTGMYVQLRADWTIAANLIG CCCCEEEEEECCCEEECCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHH AIEAVHFQVGDAIRQAGGHNADYVGVELKYGW HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC >Mature Secondary Structure MIERRRRRHGRRVERAARVSIVAGLLFAGADAVCAETVTASTSNSTSTQEPAPASTASSA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCCCCCC SAPASTSAATTASTCTAKRPTVLFNRWQEDWSVLANPCVPRAPLDGLKYLPLGNDPQSYL CCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCHHHHH SLGVNLRERLETNDAPLFGIGSAQSDTYLIQRVEVHADAHLGPHWQFFAQLQDARAFGKN HHCCCHHHHHCCCCCCEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC TVSPVDRNPLDLEQAFATYTGALGGGTVKFRVGRQEMAFDLQRFIAARDGPNVRLAFDAV CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEE WADYEYGKWRFIGYATQPVQNRNASDFDDVSNRDLTFSGVRFERQSVGPGDLSGYWSRYN ECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECEEEECCCCCCCCHHHHHHHHC RRGARFLDASGPEHRDVWDVRYTGTHGRFDWDLETMLQTGTVGNATIGAWAVGSIAGYRL CCCCEEECCCCCCCCCEEEEEEECCCCEECCCHHHHHHCCCCCCCEECCEEHHCCCCEEE DAPWSPRIALQVDAASGDRHLHDGRVGTFNPLFPNGYYFTLAGYTSYANLIHVKPSVTLK CCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCEEEC PSANLSLLGALGFQWRETTGDAVYQQPNIPVPGTAGKGGLWTGMYVQLRADWTIAANLIG CCCCEEEEEECCCEEECCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHHH AIEAVHFQVGDAIRQAGGHNADYVGVELKYGW HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA