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The map label for this gene is (hspc4-1 [H]

Identifier: 116689284

GI number: 116689284

Start: 1395009

End: 1395419

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: Bcen2424_1262

Alternate gene names: 116689284

Gene position: 1395419-1395009 (Counterclockwise)

Preceding gene: 116689285

Following gene: 116689281

Centisome position: 40.05

GC content: 70.07

Gene sequence:

>411_bases
ATGAACACGAACCCGACCCTGGCCGAACGCCAAACCAACCCCGTTCACCCGGCCGCCGCGGAAGCCGCGCGCCGGCCCGC
GATCACCCCGTCCGTCGACATCGTCGAGGATCAACGCGGCGTCACGCTGCGCGCCGACCTGCCCGGCGTGCCGCGCGAGA
ATCTCGACGTGAAGGTGCACGACAACACGCTGACGATCGAAGCCGCGACGCAGTTCGACACGGCGGCCGACCTGCGCGTG
CGGCACGCGGAAATCCGTTCGACGCGCTATGCACGGTCGTTCGTGCTGAGCGCCGACCTCGACACGTCGCGGATCGACGC
GAACCTGCGCGACGGCGTGCTGACGCTGACGATCCCGCGCCGCGAGGAAACACGCCCGCGCCGCATCGACGTGACGGCCG
GCAATGCGTGA

Upstream 100 bases:

>100_bases
AGCGCCCGCTACGAAAACGGCTGCCTGCTGATTCGCGTCGGCCGGCGCGAGGCCTCGAAGCCGCGTGCGATCACCATTCA
GTAACCTTCAGGATACCGAC

Downstream 100 bases:

>100_bases
GCGTCGACGCGTGTCCTGACGCGACGCGCATGAAAAAGCCCCGCTCCGGCGCGATGCCGGGCGGGGCTTTTTTGCATCGG
GCCGCGCGCGCTCAAGCGCG

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MNTNPTLAERQTNPVHPAAAEAARRPAITPSVDIVEDQRGVTLRADLPGVPRENLDVKVHDNTLTIEAATQFDTAADLRV
RHAEIRSTRYARSFVLSADLDTSRIDANLRDGVLTLTIPRREETRPRRIDVTAGNA

Sequences:

>Translated_136_residues
MNTNPTLAERQTNPVHPAAAEAARRPAITPSVDIVEDQRGVTLRADLPGVPRENLDVKVHDNTLTIEAATQFDTAADLRV
RHAEIRSTRYARSFVLSADLDTSRIDANLRDGVLTLTIPRREETRPRRIDVTAGNA
>Mature_136_residues
MNTNPTLAERQTNPVHPAAAEAARRPAITPSVDIVEDQRGVTLRADLPGVPRENLDVKVHDNTLTIEAATQFDTAADLRV
RHAEIRSTRYARSFVLSADLDTSRIDANLRDGVLTLTIPRREETRPRRIDVTAGNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15016; Mature: 15016

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTNPTLAERQTNPVHPAAAEAARRPAITPSVDIVEDQRGVTLRADLPGVPRENLDVKVH
CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEC
DNTLTIEAATQFDTAADLRVRHAEIRSTRYARSFVLSADLDTSRIDANLRDGVLTLTIPR
CCEEEEEECCCCCCCCCEEEEHHHHHHHHHEEEEEEECCCCCHHCCCCCCCCEEEEEECC
REETRPRRIDVTAGNA
CCCCCCCEEEEEECCC
>Mature Secondary Structure
MNTNPTLAERQTNPVHPAAAEAARRPAITPSVDIVEDQRGVTLRADLPGVPRENLDVKVH
CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEC
DNTLTIEAATQFDTAADLRVRHAEIRSTRYARSFVLSADLDTSRIDANLRDGVLTLTIPR
CCEEEEEECCCCCCCCCEEEEHHHHHHHHHEEEEEEECCCCCHHCCCCCCCCEEEEEECC
REETRPRRIDVTAGNA
CCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA