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The map label for this gene is xpsD [H]

Identifier: 116626816

GI number: 116626816

Start: 9769908

End: 9772166

Strand: Direct

Name: xpsD [H]

Synonym: Acid_7789

Alternate gene names: 116626816

Gene position: 9769908-9772166 (Clockwise)

Preceding gene: 116626815

Following gene: 116626817

Centisome position: 98.04

GC content: 62.15

Gene sequence:

>2259_bases
ATGCGCAGATTGTTCGATCTCCGGTTGGTCCTGACAGTACTTGCCGCCAGCGCCGTGCTTTCGGCGCAGCCTGCCCCTTC
GCGGATTTTCCCGCCGCCGGCGCCGGAACCACAGCAGCCGACCCCGCAGCAGCCCCAGCCCCAGCAGCAGCCGCAGCAAC
CGGGAACTCCGGGACAGCCGCCCGCGACGCAGCCGCAGAACGCGCCGGCTACGAATGCGCCGCGCCTGACCGATAGCGGG
GCGTTCATCATGCCCAACGCGTCGCTGACGGAGATGATCGACCTGCTGGCGAAGCGGCTCAAGATCAATTACATTCTGGA
CCCCGCGGTGCGCGGCACGGTTTCGATCTTCACCTACGGCGAAGTCAAGCCGGTGGACTACATGCCGCTGCTCGAAACGA
TTCTGCGCGTCAATGGCGATGCGATGGTGAAGGTCGGCGACATGTACCGGATCGTGCCGGTGAACCGCATCAATCAACTG
CCGATTCAGCCGATGGTGAATGTGGACCCGAAGACGCTGCCCGACGACGAGCGGATGATCATGAACCTGATCTTCCTGAA
GTACGCCACGGCATCGGAGATCGCCAACCTGATCAAGCCGTTCCTGGGCGAAGGCGCCTACGCCAGCACCTACGAGGCGG
CGAACCTGCTGATCCTGGAAGACAACTCGCGCAACATGCGGCGCACCATGGAACTGATCGGGCTTTTCGACAGCGATCAG
TTTGCGGGTCAGCGCGTGCGCCTGTTCGAAGTGGAGAACAGCCGTCCCAGCGATTTGCAGAAGGAGCTGGAACAGGTCTT
CAAGGCCTACGCGCTTTCGGAGAAGGGCTCGGGCGTTAAGTTCATCCCGGTGGACCGCATCAACACGATCATCGCGGTGG
CGCCGAATCCGGGAATCTTCACCCAGGTGGAGCAATGGATCGGCAAGCTCGATATCGCAGTGAAGGCGAGCGCGGGAGCG
GTCAACAGCTACGTCTACCGCTTGAAGTATTCGCGGGCGGAGACGGTGGCGATGGCGATCATGGCGCTGTACAGCGGCAA
CCCGATGGCGCTGATGGCGCTGGGCGCGATGGCCAGCAATATGAACGGCGGCATGAACGGCGGCAGCATGTACGGCATGA
ATGGCACGCTGAACAGCGGCGCCATGGGGATGGGTGGCGCCTACAGTGTCATGGGCCAGATGGGCGGCGGCTACCCGGGC
ATGTACTCGGGAATGCAGGGCCAGTACGGCCCTACTCCCCTGCCGATGGCGGTATCGCCGATGGCCACGCAGAGTCCGGC
GGCGATTGCCAGCACCAATCCGGCGGACCAGACCGGAATGTACCTCGGGAACTTGATGCAGCCGCAAAATGGCCCGCGCG
TGCCGCACGTGATTCCGAACCCATTCGACAATACGATTTTGATTCAAGGCACTCCGCAGGAGTACGAACAGATTCTGGGG
CTGCTGCGGCAGTTGGACATTGCTCCGCGCCAGGTGCTGATCGACGCCAAGATTTACGAAGTGGATTTGAACGGCGCGTT
CGCGGCGGGCGTGAGCGCCTATCTAGACAAGAAAGACACGGGGCCGTTCTCGCGAACCCTGAACGCCGCGACGGGCGCGG
GCGGACTCACACTCACCACAGGCGCGCTCGTGCTGCGCAGCCATGAGCTCTTGGCCGCACTGACTGCGTCGGAAACCGCC
AGCCACTCCAAGGTGATTTCGGCGCCGAGCATCATTGCGACCGATAGCGTGCCGGCGACGTTGAATGTGGGCGACGACGT
TCCGGTGCTGACCTCGCAGGCGGTGGCCGGCGGAGTGCAGTCGAGCGGCAGCTCTGTATTCACAAATACGGTGAGCAATC
GTAGTACCGGCGTGACATTGAGCATCATGGCTCGGGTGAACTCGAGTGGAATTGTAACGTTGATTGTGAACCAGAATGTG
AGTTCACCGCAGCCACCGCCTGCGAATTCGGCGATTCAATCACCGTCGTTTTCGAACCGCTCGTTCCAGACGCAGCTCAC
GGTCCAGGATGGGGACACGGTCGCGATCGGCGGAATCATTCTGGAGAGCAATCTGCAGAGCTCCGCGGGCGTGCCATTCC
TGCACCGGCTGCCGGGAATCGGCGCGGCCTTCGGCGCCAAGAGCTACACCAAGAGCCGCACGGAGCTGGTGGTTTTCCTG
ACGCCGCGCGTGATTTACGACACCAACCAGATGGTGGATGCCACCGACGAGATCCGCTCTGGCATGAAGCGGATCAACCG
AGCCGTGAAGAATCAGTAA

Upstream 100 bases:

>100_bases
TGTCGGAGCTGGATGCAACCGAAACGGCCGCATTGCAGAAGACGCGCGCCGAGAATATGACGTCTAAACAGGAATAGCCG
CACCGTCCCCTAGGAAAATC

Downstream 100 bases:

>100_bases
AGAACGGCGTCCTGGTATTGGAGCATCCATTCCACGGCGTGCGGGCACGCTCGCCGTCTCTCCTGGCGCTATACACTCTT
CATGAGGTGCAGCGAGCATG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 752; Mature: 752

Protein sequence:

>752_residues
MRRLFDLRLVLTVLAASAVLSAQPAPSRIFPPPAPEPQQPTPQQPQPQQQPQQPGTPGQPPATQPQNAPATNAPRLTDSG
AFIMPNASLTEMIDLLAKRLKINYILDPAVRGTVSIFTYGEVKPVDYMPLLETILRVNGDAMVKVGDMYRIVPVNRINQL
PIQPMVNVDPKTLPDDERMIMNLIFLKYATASEIANLIKPFLGEGAYASTYEAANLLILEDNSRNMRRTMELIGLFDSDQ
FAGQRVRLFEVENSRPSDLQKELEQVFKAYALSEKGSGVKFIPVDRINTIIAVAPNPGIFTQVEQWIGKLDIAVKASAGA
VNSYVYRLKYSRAETVAMAIMALYSGNPMALMALGAMASNMNGGMNGGSMYGMNGTLNSGAMGMGGAYSVMGQMGGGYPG
MYSGMQGQYGPTPLPMAVSPMATQSPAAIASTNPADQTGMYLGNLMQPQNGPRVPHVIPNPFDNTILIQGTPQEYEQILG
LLRQLDIAPRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGPFSRTLNAATGAGGLTLTTGALVLRSHELLAALTASETA
SHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGSSVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNV
SSPQPPPANSAIQSPSFSNRSFQTQLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFL
TPRVIYDTNQMVDATDEIRSGMKRINRAVKNQ

Sequences:

>Translated_752_residues
MRRLFDLRLVLTVLAASAVLSAQPAPSRIFPPPAPEPQQPTPQQPQPQQQPQQPGTPGQPPATQPQNAPATNAPRLTDSG
AFIMPNASLTEMIDLLAKRLKINYILDPAVRGTVSIFTYGEVKPVDYMPLLETILRVNGDAMVKVGDMYRIVPVNRINQL
PIQPMVNVDPKTLPDDERMIMNLIFLKYATASEIANLIKPFLGEGAYASTYEAANLLILEDNSRNMRRTMELIGLFDSDQ
FAGQRVRLFEVENSRPSDLQKELEQVFKAYALSEKGSGVKFIPVDRINTIIAVAPNPGIFTQVEQWIGKLDIAVKASAGA
VNSYVYRLKYSRAETVAMAIMALYSGNPMALMALGAMASNMNGGMNGGSMYGMNGTLNSGAMGMGGAYSVMGQMGGGYPG
MYSGMQGQYGPTPLPMAVSPMATQSPAAIASTNPADQTGMYLGNLMQPQNGPRVPHVIPNPFDNTILIQGTPQEYEQILG
LLRQLDIAPRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGPFSRTLNAATGAGGLTLTTGALVLRSHELLAALTASETA
SHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGSSVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNV
SSPQPPPANSAIQSPSFSNRSFQTQLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFL
TPRVIYDTNQMVDATDEIRSGMKRINRAVKNQ
>Mature_752_residues
MRRLFDLRLVLTVLAASAVLSAQPAPSRIFPPPAPEPQQPTPQQPQPQQQPQQPGTPGQPPATQPQNAPATNAPRLTDSG
AFIMPNASLTEMIDLLAKRLKINYILDPAVRGTVSIFTYGEVKPVDYMPLLETILRVNGDAMVKVGDMYRIVPVNRINQL
PIQPMVNVDPKTLPDDERMIMNLIFLKYATASEIANLIKPFLGEGAYASTYEAANLLILEDNSRNMRRTMELIGLFDSDQ
FAGQRVRLFEVENSRPSDLQKELEQVFKAYALSEKGSGVKFIPVDRINTIIAVAPNPGIFTQVEQWIGKLDIAVKASAGA
VNSYVYRLKYSRAETVAMAIMALYSGNPMALMALGAMASNMNGGMNGGSMYGMNGTLNSGAMGMGGAYSVMGQMGGGYPG
MYSGMQGQYGPTPLPMAVSPMATQSPAAIASTNPADQTGMYLGNLMQPQNGPRVPHVIPNPFDNTILIQGTPQEYEQILG
LLRQLDIAPRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGPFSRTLNAATGAGGLTLTTGALVLRSHELLAALTASETA
SHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGSSVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNV
SSPQPPPANSAIQSPSFSNRSFQTQLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFL
TPRVIYDTNQMVDATDEIRSGMKRINRAVKNQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=287, Percent_Identity=29.2682926829268, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1789793, Length=249, Percent_Identity=25.7028112449799, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 80207; Mature: 80207

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLFDLRLVLTVLAASAVLSAQPAPSRIFPPPAPEPQQPTPQQPQPQQQPQQPGTPGQP
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PATQPQNAPATNAPRLTDSGAFIMPNASLTEMIDLLAKRLKINYILDPAVRGTVSIFTYG
CCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHEEEEEECCCCCCEEEEEEEC
EVKPVDYMPLLETILRVNGDAMVKVGDMYRIVPVNRINQLPIQPMVNVDPKTLPDDERMI
CCCCCCHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
MNLIFLKYATASEIANLIKPFLGEGAYASTYEAANLLILEDNSRNMRRTMELIGLFDSDQ
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
FAGQRVRLFEVENSRPSDLQKELEQVFKAYALSEKGSGVKFIPVDRINTIIAVAPNPGIF
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCHH
TQVEQWIGKLDIAVKASAGAVNSYVYRLKYSRAETVAMAIMALYSGNPMALMALGAMASN
HHHHHHHHHEEEEEEECCCCHHHEEEEEECCHHHHHHHHHHHHHCCCCCEEHHHHHHHHC
MNGGMNGGSMYGMNGTLNSGAMGMGGAYSVMGQMGGGYPGMYSGMQGQYGPTPLPMAVSP
CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC
MATQSPAAIASTNPADQTGMYLGNLMQPQNGPRVPHVIPNPFDNTILIQGTPQEYEQILG
CCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
LLRQLDIAPRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGPFSRTLNAATGAGGLTLTT
HHHHCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEH
GALVLRSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQ
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEECCCCEEEECCCCCCCHHHHHHHCCCC
SSGSSVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSPSFSNR
CCCCEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
SFQTQLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFL
CEEEEEEEECCCEEEEEEEEEECCCCCCCCCCHHHHCCCCCHHHCCCHHCCCCCEEEEEE
TPRVIYDTNQMVDATDEIRSGMKRINRAVKNQ
CCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRLFDLRLVLTVLAASAVLSAQPAPSRIFPPPAPEPQQPTPQQPQPQQQPQQPGTPGQP
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PATQPQNAPATNAPRLTDSGAFIMPNASLTEMIDLLAKRLKINYILDPAVRGTVSIFTYG
CCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHEEEEEECCCCCCEEEEEEEC
EVKPVDYMPLLETILRVNGDAMVKVGDMYRIVPVNRINQLPIQPMVNVDPKTLPDDERMI
CCCCCCHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
MNLIFLKYATASEIANLIKPFLGEGAYASTYEAANLLILEDNSRNMRRTMELIGLFDSDQ
HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
FAGQRVRLFEVENSRPSDLQKELEQVFKAYALSEKGSGVKFIPVDRINTIIAVAPNPGIF
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCHH
TQVEQWIGKLDIAVKASAGAVNSYVYRLKYSRAETVAMAIMALYSGNPMALMALGAMASN
HHHHHHHHHEEEEEEECCCCHHHEEEEEECCHHHHHHHHHHHHHCCCCCEEHHHHHHHHC
MNGGMNGGSMYGMNGTLNSGAMGMGGAYSVMGQMGGGYPGMYSGMQGQYGPTPLPMAVSP
CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC
MATQSPAAIASTNPADQTGMYLGNLMQPQNGPRVPHVIPNPFDNTILIQGTPQEYEQILG
CCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
LLRQLDIAPRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGPFSRTLNAATGAGGLTLTT
HHHHCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCEEEEH
GALVLRSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQ
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEECCCCEEEECCCCCCCHHHHHHHCCCC
SSGSSVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSPSFSNR
CCCCEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
SFQTQLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFL
CEEEEEEEECCCEEEEEEEEEECCCCCCCCCCHHHHCCCCCHHHCCCHHCCCCCEEEEEE
TPRVIYDTNQMVDATDEIRSGMKRINRAVKNQ
CCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]