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The map label for this gene is yfiB [C]

Identifier: 116624434

GI number: 116624434

Start: 6716946

End: 6718472

Strand: Reverse

Name: yfiB [C]

Synonym: Acid_5356

Alternate gene names: 116624434

Gene position: 6718472-6716946 (Counterclockwise)

Preceding gene: 116624435

Following gene: 116624431

Centisome position: 67.42

GC content: 64.24

Gene sequence:

>1527_bases
ATGATACGAACTCTCGTCCTCGGCATAACTACGTTTTCATTTGCGTTGCCGGCGATCTCGCAGCAGACCGTGCCCCTATA
TCGGGTGACCGTAGTTCAGCGACAGGTAAACTCAGTGAATTACCAGTACCGCTCCGGCCCCACTAAGGTAGACCTGCGCG
GCACCGTGCTGATGCCGCACGCGGGCGGAGACGCGACGGTTGAATCGAAGCGCGGGCGGACCGAGATCACCGCCAAAGTA
CACCATGTAGTGGCTCCCGGTCGTTTCGGACGGGAGTATCTCACCTATGTTCTGTGGGCGATCACGCCGGAAGGCTCTCC
CCACAATCTCGGCGAGATTGTCCCGAATAGTTCCGATAGCGCGAGCGTGACGGTGACAACGGACCTGCAGGCGTTCGGCC
TGATCGTCACCGCCGAACCCTACTCAGCCGTGCGTCAGCCGGGCGATGTGGTCGTCCTGGAAAACGAGGTGCGGCCGGAT
ACGATTGGCCGTGTCCAGCCGATTACGGCCAAATACGAACTCATGCCGCGAGGCCATTACACCTGGAATGTCGATCAGAA
TCCCGAGCCGGACGGCCCCAAGGTTTCCATGCGCGAATATGAAGCGATCACGCAGATCTATCAGGCGCAGAATGCGATTG
GCATAGCGCGCACGGCGAATGCCGCGCAGTTGGCGCCAAATACGCTGTCCGAGGCGGAACGCATGCTTGCGGAAGCACAG
CGATTGCAAACTGCCCACGCCGACACCAGCCTGATCTCACAGAGCGCGAGAGCGGCGGTGCAGACCGCCGAAGATGCCCG
ATTGATCGCTGAGCGCCGGGCCCAGGAGCAGAACCTGGCAGCGGCACGCAGCACAGCCGCCGCGGCCGAACAGGAGAAAT
TGCAGGCGCAGGCCGATGCCCAGCGCGCTAAAGTGGAAGCCGACTCTGCTCGCGCTCAGATCGATGCCGAGCGCGCCGCG
CGCCAGCAGGCGGAGGCCGCCGCGGCAGCAGCCGAGAGCCGTGCCGCAGCCGGCGCCGACCGTGCCGCCGCAACACCCCC
CGCCGCGCTCCCCGCGCCGCGCCGCGAGGCTGTGGACCAAAAGAGCCAGGTGCGGATGCGTTTGCTGGAGAGCCTCAATG
GCCTGTTGCCCTCTCGCGATACTCCCCGCGGGCTGATTGTGACGGTACCCGACCAGGGCTTTAACGGAGCCTCCCTGCGG
ACGGATTATTCCGAACGGCTGGCACGGGTCGCCGCGGTGGTGGCGGCAGAGCAGGGCCTGCGAATGACTATTGAAGGGAG
TACCGACAGCGCCGCCACCGAATCGCTGGCGATGAAGCGGGCCTACGAGGTGCGCGATGCCATGATGCGCGGCGGATTGC
CCTCGTCCTCGGTTGACGCTCGGGGCTTAGGCGCTTCGCGGCCGTTGACTTCGAACGGCACCGAATCGGGCCGGAGCACC
AATCGCCGCGTGGAGATCGTTATCTCCGGCAGCGCCATAGGCGACCTCCCGTTTTGGGACCATACGTACAGTATTTCGCG
GCGCTAG

Upstream 100 bases:

>100_bases
TACCGCCGCAAAGCGCTTAGTGGACGAGACTTCCGCCTAACGGCATGGCGGTTGCAGTATTTTCTCCCGACATGCTACGC
GGCATGCGGAAGAGGATCTT

Downstream 100 bases:

>100_bases
CGGGAGTGGTCAGTTGACCCACTCGCCCTCGTCGTCATCTTCCATTTCCGCCGTCTGAAGAGCGTCGAGCGCGACTTCGC
GGATCTCCTCGTCCGGCGAG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: OmpA Family Protein

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MIRTLVLGITTFSFALPAISQQTVPLYRVTVVQRQVNSVNYQYRSGPTKVDLRGTVLMPHAGGDATVESKRGRTEITAKV
HHVVAPGRFGREYLTYVLWAITPEGSPHNLGEIVPNSSDSASVTVTTDLQAFGLIVTAEPYSAVRQPGDVVVLENEVRPD
TIGRVQPITAKYELMPRGHYTWNVDQNPEPDGPKVSMREYEAITQIYQAQNAIGIARTANAAQLAPNTLSEAERMLAEAQ
RLQTAHADTSLISQSARAAVQTAEDARLIAERRAQEQNLAAARSTAAAAEQEKLQAQADAQRAKVEADSARAQIDAERAA
RQQAEAAAAAAESRAAAGADRAAATPPAALPAPRREAVDQKSQVRMRLLESLNGLLPSRDTPRGLIVTVPDQGFNGASLR
TDYSERLARVAAVVAAEQGLRMTIEGSTDSAATESLAMKRAYEVRDAMMRGGLPSSSVDARGLGASRPLTSNGTESGRST
NRRVEIVISGSAIGDLPFWDHTYSISRR

Sequences:

>Translated_508_residues
MIRTLVLGITTFSFALPAISQQTVPLYRVTVVQRQVNSVNYQYRSGPTKVDLRGTVLMPHAGGDATVESKRGRTEITAKV
HHVVAPGRFGREYLTYVLWAITPEGSPHNLGEIVPNSSDSASVTVTTDLQAFGLIVTAEPYSAVRQPGDVVVLENEVRPD
TIGRVQPITAKYELMPRGHYTWNVDQNPEPDGPKVSMREYEAITQIYQAQNAIGIARTANAAQLAPNTLSEAERMLAEAQ
RLQTAHADTSLISQSARAAVQTAEDARLIAERRAQEQNLAAARSTAAAAEQEKLQAQADAQRAKVEADSARAQIDAERAA
RQQAEAAAAAAESRAAAGADRAAATPPAALPAPRREAVDQKSQVRMRLLESLNGLLPSRDTPRGLIVTVPDQGFNGASLR
TDYSERLARVAAVVAAEQGLRMTIEGSTDSAATESLAMKRAYEVRDAMMRGGLPSSSVDARGLGASRPLTSNGTESGRST
NRRVEIVISGSAIGDLPFWDHTYSISRR
>Mature_508_residues
MIRTLVLGITTFSFALPAISQQTVPLYRVTVVQRQVNSVNYQYRSGPTKVDLRGTVLMPHAGGDATVESKRGRTEITAKV
HHVVAPGRFGREYLTYVLWAITPEGSPHNLGEIVPNSSDSASVTVTTDLQAFGLIVTAEPYSAVRQPGDVVVLENEVRPD
TIGRVQPITAKYELMPRGHYTWNVDQNPEPDGPKVSMREYEAITQIYQAQNAIGIARTANAAQLAPNTLSEAERMLAEAQ
RLQTAHADTSLISQSARAAVQTAEDARLIAERRAQEQNLAAARSTAAAAEQEKLQAQADAQRAKVEADSARAQIDAERAA
RQQAEAAAAAAESRAAAGADRAAATPPAALPAPRREAVDQKSQVRMRLLESLNGLLPSRDTPRGLIVTVPDQGFNGASLR
TDYSERLARVAAVVAAEQGLRMTIEGSTDSAATESLAMKRAYEVRDAMMRGGLPSSSVDARGLGASRPLTSNGTESGRST
NRRVEIVISGSAIGDLPFWDHTYSISRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54595; Mature: 54595

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTLVLGITTFSFALPAISQQTVPLYRVTVVQRQVNSVNYQYRSGPTKVDLRGTVLMPH
CCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCEEEEEEEEEEEEC
AGGDATVESKRGRTEITAKVHHVVAPGRFGREYLTYVLWAITPEGSPHNLGEIVPNSSDS
CCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHEEEEEEECCCCCCCCCHHCCCCCCCC
ASVTVTTDLQAFGLIVTAEPYSAVRQPGDVVVLENEVRPDTIGRVQPITAKYELMPRGHY
CEEEEEECCEEEEEEEEECCHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCE
TWNVDQNPEPDGPKVSMREYEAITQIYQAQNAIGIARTANAAQLAPNTLSEAERMLAEAQ
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHCCCHHHHHHHHHHHHHH
RLQTAHADTSLISQSARAAVQTAEDARLIAERRAQEQNLAAARSTAAAAEQEKLQAQADA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRAKVEADSARAQIDAERAARQQAEAAAAAAESRAAAGADRAAATPPAALPAPRREAVDQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCH
KSQVRMRLLESLNGLLPSRDTPRGLIVTVPDQGFNGASLRTDYSERLARVAAVVAAEQGL
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
RMTIEGSTDSAATESLAMKRAYEVRDAMMRGGLPSSSVDARGLGASRPLTSNGTESGRST
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRRVEIVISGSAIGDLPFWDHTYSISRR
CCEEEEEEECCCCCCCCCCCCCEECCCC
>Mature Secondary Structure
MIRTLVLGITTFSFALPAISQQTVPLYRVTVVQRQVNSVNYQYRSGPTKVDLRGTVLMPH
CCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCEEEEEEEEEEEEC
AGGDATVESKRGRTEITAKVHHVVAPGRFGREYLTYVLWAITPEGSPHNLGEIVPNSSDS
CCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHEEEEEEECCCCCCCCCHHCCCCCCCC
ASVTVTTDLQAFGLIVTAEPYSAVRQPGDVVVLENEVRPDTIGRVQPITAKYELMPRGHY
CEEEEEECCEEEEEEEEECCHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCE
TWNVDQNPEPDGPKVSMREYEAITQIYQAQNAIGIARTANAAQLAPNTLSEAERMLAEAQ
EECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHCCCHHHHHHHHHHHHHH
RLQTAHADTSLISQSARAAVQTAEDARLIAERRAQEQNLAAARSTAAAAEQEKLQAQADA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRAKVEADSARAQIDAERAARQQAEAAAAAAESRAAAGADRAAATPPAALPAPRREAVDQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCH
KSQVRMRLLESLNGLLPSRDTPRGLIVTVPDQGFNGASLRTDYSERLARVAAVVAAEQGL
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
RMTIEGSTDSAATESLAMKRAYEVRDAMMRGGLPSSSVDARGLGASRPLTSNGTESGRST
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRRVEIVISGSAIGDLPFWDHTYSISRR
CCEEEEEEECCCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA