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The map label for this gene is yagA [H]

Identifier: 116624425

GI number: 116624425

Start: 6706229

End: 6707416

Strand: Reverse

Name: yagA [H]

Synonym: Acid_5347

Alternate gene names: 116624425

Gene position: 6707416-6706229 (Counterclockwise)

Preceding gene: 116624426

Following gene: 116624423

Centisome position: 67.31

GC content: 58.67

Gene sequence:

>1188_bases
ATGCCCTGGCAGGAGATCCGAGTGGAAGAACAACGGTTATTGATGATTCGGGACCATGAAGAGGGGATGTCTATCTCCGA
GTTGGCGGAGGTCTATGGCGTCTCCCGCAAGACGGTCTACAAGTGGCTGGAGCGCCACGACGAGCAGGGTTTTCTGGGGC
TACAAGCACAGAGCCGGCGCCCGCATCGCTCGCCCAACCAGGTGACGTCGGAGGTGGAAGGTGCGATCATCGCAGCACGC
CACAAGTGGGGCTGGGGTCCTGGGAAACTGCGCGTCAAACTATTCCAACAGGACAGTCGCGTGCCATGGCCAGCGGTGAG
CACCATCGCCGCCGTGCTGAAGGCCAACGGGCTGGTGGTCAGTCGTCGCAACCGGCCTCGTGTTCCCATTCAACGTCCTC
CGTATCTCGCTGCCGATGGGCCCAACGCAGTGTGGAATATCGACTACAAAGGCTGGTTTCGCTGCGGTGACGGCACCCGT
GTGGATCCGCTAACGATCAGCGATGGTTTTAGTCGGTATCTGCTCCGTTGCCAGCACGTGGAGCAGACCGGATATGAACT
CACGCGGGCGGTATTCGTTGCGACATTTCAGGAGTTTGGCTTGCCTGGAGCCATCCACTCCGATAACGGAACGCCGTTTG
CCTCGGTGGCTCCGGGTGGGCTGAGCAGGCTGTCAATTTGGTTCGTAAAGTTGGGAATCGTTGTGGAGCGCAGCCGGCCG
GCATGTCCGCAGGACAATGGACGGCACGAGCGAATGCATCGGACGTTGAAGGCCGCGACGGCCAAACCTCCGCAGGCGAC
GGTGCGACTGCAGCAGCAGGCATTTCACGCTTTCCAACGGGAGTACAACGAGGAGAGACCGCACGAAGCTTTGGATAACA
AGACCCCGCACTCCTGTTACCAGGCAAGTGCGCGCTCTTATCCGCGGCGTGTGCCGGAATTGGAATACGGAGACGACATG
GAAACGCGCGTCATCTCGCAGCAGGGGAGTTTGAAATGGAAAGGAGTGAGGACCTTCATCAGCGAAGTGTTCGCTTACGA
GACCTTGGGCATTAAAGTGATCGATGAGCGCTGGGTGGAGCTCTACTTCGGTCCCATTCGATTGGGTTGGCTCGACGGCT
ACCGACAAACTTTCAGCCGCCGAAAGCCGAAAGCTCTTATCGCTGAAGAGATCTCCGTAATCGTCTAA

Upstream 100 bases:

>100_bases
GTACGGTACGTTCCGAAGACATAGGTAACAAAACATTCTGAGGACATAGGTAACAGTGTGGGAAGAGCTCGGCTGACCGG
GGTGAGCCAGCATAGAAGGC

Downstream 100 bases:

>100_bases
GCCGAGCCGAAAACGCTCAGGGGTCGCCAGCCGCGACCCCTGACTTTCCCTCCACTCCCGCCAGCGAAAAACAAACCTAA
AACAAACCCCAACACAAAAC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MPWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRRPHRSPNQVTSEVEGAIIAAR
HKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVVSRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTR
VDPLTISDGFSRYLLRCQHVEQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCYQASARSYPRRVPELEYGDDM
ETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVELYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV

Sequences:

>Translated_395_residues
MPWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRRPHRSPNQVTSEVEGAIIAAR
HKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVVSRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTR
VDPLTISDGFSRYLLRCQHVEQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCYQASARSYPRRVPELEYGDDM
ETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVELYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV
>Mature_394_residues
PWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRRPHRSPNQVTSEVEGAIIAARH
KWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVVSRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTRV
DPLTISDGFSRYLLRCQHVEQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRPA
CPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCYQASARSYPRRVPELEYGDDME
TRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVELYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=388, Percent_Identity=32.9896907216495, Blast_Score=184, Evalue=8e-48,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 45229; Mature: 45098

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRR
CCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCC
PHRSPNQVTSEVEGAIIAARHKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVV
CCCCHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEE
SRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTRVDPLTISDGFSRYLLRCQHV
ECCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCEEEECCHHHHHHHHHHHH
EQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCHHHHHHHEEEEEEEEECCCC
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCY
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHH
QASARSYPRRVPELEYGDDMETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVE
HHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCEEEHHCCEEH
LYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV
EEECCEEEEHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRR
CHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCC
PHRSPNQVTSEVEGAIIAARHKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVV
CCCCHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEE
SRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTRVDPLTISDGFSRYLLRCQHV
ECCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCEEEECCHHHHHHHHHHHH
EQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCHHHHHHHEEEEEEEEECCCC
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCY
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHH
QASARSYPRRVPELEYGDDMETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVE
HHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCEEEHHCCEEH
LYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV
EEECCEEEEHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]