Click here to switch to the map view.

The map label for this gene is 116624367

Identifier: 116624367

GI number: 116624367

Start: 6627841

End: 6629370

Strand: Reverse

Name: 116624367

Synonym: Acid_5288

Alternate gene names: NA

Gene position: 6629370-6627841 (Counterclockwise)

Preceding gene: 116624369

Following gene: 116624366

Centisome position: 66.52

GC content: 64.05

Gene sequence:

>1530_bases
ATGCCGGTAAACGAACAGCTGGAAAGGATCCTGAAAAGCGCGCCGCTGATTTCGTCCCCGAGTTTGTGCAGGTTTTTACG
GTACATCGTGGAAGAAACGCTGGCGGGGCGTGCCTCGGAGATCAAGGAGTATCCGCTAGGTGTGCGGGTATTCGACCGGG
GAGAAGATTTTAACCCAAGGTTGGACCCGATCGTCCGGGTGCAGGCGCGCAATTTACGGGCGCGGATCGCCCGGTATTAC
CAGGGGCCGGGCGCGGACGATCCAATACGAATCGAGTTGCCGAAAGGTACATACGTTCCGGTTTTCCACCAGGTAACGGA
GGAGGTCCGGACGGCGGACGCACCGGTCGCGATTGCGGCCGGTGCAGAGGCCGAAACACCGGTGGAAGCGGCAGTTTACG
TTCCCCCGTCAGTGATGCCGGCGCCTCCGCCGCGAAGTCCGGTGGCGGAGAGCCGGCAGGGGCAGGGGCTGAAGCCTCGA
TTCCTGCTGGCGACCGTGGCGCTGGTGGTGATCCTGGCAAGCATCGCCGTGTTGTGGATCACGCGGACTTATGCGGCTGC
GCGCCAGAACAACGCGGACTCGGTATCCGAGGATCTGCTGATTCGCGGACGGTACTCGCTGGACCGGCAGACGGAGGGCG
CCCTGCGCGAGGGGATTCTGAGTTTCGAACAGGCGGCGGCACGCTCGCCAAAGTTCGCTCCGGCGTATGCGGCGCTGGCG
GACGGATACAACCTTCTTTCGCAGTTCGGCTACATTGCGCCACGTGAGGGGATGGAGAAGGCGCGGACGGCGGCGTTGAA
ATCTCTGGAACTGAATCCGCGCCTCGCCGAGGGGCACGTGGCGCTCGCGGCGGTGATCGAGGCCTACGATTGGGACTGGG
CCGCGGCCGAGCGCGAGTATCGGAAAGCGCTGCAGCTGAGTCCGGGATTGCCGGCGGCGCACCTGTGGTACGGCATGTTC
CTGCGCGATCAAGGCCGGCTGAAGGAAGCATTGCTCGAGTTACGGCGGGCAGCGCAACTGGAGCCTTACTCGGTGGTGGC
GAGCATTAACCTGGCTTGCGGCTTGCTGCTGGAAGGCAACTATTCGGCGGCGCTGGAGCAGGCCAACCGTGCGGTGGAAC
TGGCGCCGGAACTGCCGACGGCCTCGCTGATTGTGGCGCATGCCGCGCGGGCGGCGGAGCGCACGGCGGAATCGGACGCG
GCGCTGGAGAGGGCACGGCAGGCAGCGAGCGGCAATCCGCACGCGCTGGCGTTGGTTGCCTGCGAATTGGCGAAACTGGG
CAGGCACGAGGAGAGCATGCGCGTGGTGCGGGAACTGGAAGCGCTCTCGCGGCAGCGCTATGTATCGCCGTTCGACTTAG
GCAAGGTGTCGTTGGTGATGGGAGATGGGGACCAGGCGCTGAATCTCTTCGAAGAGGCATTCCGGCAGCGATCGAGCGGG
ATGATTTTCCTGCGCAATGCCAATGCCGGGTGCGTGCGTAACTTACCGCGCTTCCGCTCACTGATCGAAAAGATGCACTT
CCAGGGTTAG

Upstream 100 bases:

>100_bases
ATTGCCTTTACGCTATCACGCGACACGGTGGGAGAAAGGACAATGTTGCACCGGTTAAGCGGGACAAAATGCGTAGTGGC
GCGTCATATTGTCAAATCCC

Downstream 100 bases:

>100_bases
ACTGCCAGGGTTAAACCGCAGGTTAACTTCCGGCAACATGACGCGGGCGCGGCGGCGTGTCAGACTGCCGACATGTCTCC
ACGAACACTTGTTTTCCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MPVNEQLERILKSAPLISSPSLCRFLRYIVEETLAGRASEIKEYPLGVRVFDRGEDFNPRLDPIVRVQARNLRARIARYY
QGPGADDPIRIELPKGTYVPVFHQVTEEVRTADAPVAIAAGAEAETPVEAAVYVPPSVMPAPPPRSPVAESRQGQGLKPR
FLLATVALVVILASIAVLWITRTYAAARQNNADSVSEDLLIRGRYSLDRQTEGALREGILSFEQAAARSPKFAPAYAALA
DGYNLLSQFGYIAPREGMEKARTAALKSLELNPRLAEGHVALAAVIEAYDWDWAAAEREYRKALQLSPGLPAAHLWYGMF
LRDQGRLKEALLELRRAAQLEPYSVVASINLACGLLLEGNYSAALEQANRAVELAPELPTASLIVAHAARAAERTAESDA
ALERARQAASGNPHALALVACELAKLGRHEESMRVVRELEALSRQRYVSPFDLGKVSLVMGDGDQALNLFEEAFRQRSSG
MIFLRNANAGCVRNLPRFRSLIEKMHFQG

Sequences:

>Translated_509_residues
MPVNEQLERILKSAPLISSPSLCRFLRYIVEETLAGRASEIKEYPLGVRVFDRGEDFNPRLDPIVRVQARNLRARIARYY
QGPGADDPIRIELPKGTYVPVFHQVTEEVRTADAPVAIAAGAEAETPVEAAVYVPPSVMPAPPPRSPVAESRQGQGLKPR
FLLATVALVVILASIAVLWITRTYAAARQNNADSVSEDLLIRGRYSLDRQTEGALREGILSFEQAAARSPKFAPAYAALA
DGYNLLSQFGYIAPREGMEKARTAALKSLELNPRLAEGHVALAAVIEAYDWDWAAAEREYRKALQLSPGLPAAHLWYGMF
LRDQGRLKEALLELRRAAQLEPYSVVASINLACGLLLEGNYSAALEQANRAVELAPELPTASLIVAHAARAAERTAESDA
ALERARQAASGNPHALALVACELAKLGRHEESMRVVRELEALSRQRYVSPFDLGKVSLVMGDGDQALNLFEEAFRQRSSG
MIFLRNANAGCVRNLPRFRSLIEKMHFQG
>Mature_508_residues
PVNEQLERILKSAPLISSPSLCRFLRYIVEETLAGRASEIKEYPLGVRVFDRGEDFNPRLDPIVRVQARNLRARIARYYQ
GPGADDPIRIELPKGTYVPVFHQVTEEVRTADAPVAIAAGAEAETPVEAAVYVPPSVMPAPPPRSPVAESRQGQGLKPRF
LLATVALVVILASIAVLWITRTYAAARQNNADSVSEDLLIRGRYSLDRQTEGALREGILSFEQAAARSPKFAPAYAALAD
GYNLLSQFGYIAPREGMEKARTAALKSLELNPRLAEGHVALAAVIEAYDWDWAAAEREYRKALQLSPGLPAAHLWYGMFL
RDQGRLKEALLELRRAAQLEPYSVVASINLACGLLLEGNYSAALEQANRAVELAPELPTASLIVAHAARAAERTAESDAA
LERARQAASGNPHALALVACELAKLGRHEESMRVVRELEALSRQRYVSPFDLGKVSLVMGDGDQALNLFEEAFRQRSSGM
IFLRNANAGCVRNLPRFRSLIEKMHFQG

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI32307148, Length=288, Percent_Identity=25.3472222222222, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI32307150, Length=288, Percent_Identity=25.3472222222222, Blast_Score=70, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115532690, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=247, Percent_Identity=26.7206477732794, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17647755, Length=288, Percent_Identity=24.6527777777778, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24585827, Length=288, Percent_Identity=24.6527777777778, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24585829, Length=288, Percent_Identity=24.6527777777778, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55895; Mature: 55763

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNEQLERILKSAPLISSPSLCRFLRYIVEETLAGRASEIKEYPLGVRVFDRGEDFNPR
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCC
LDPIVRVQARNLRARIARYYQGPGADDPIRIELPKGTYVPVFHQVTEEVRTADAPVAIAA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
GAEAETPVEAAVYVPPSVMPAPPPRSPVAESRQGQGLKPRFLLATVALVVILASIAVLWI
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TRTYAAARQNNADSVSEDLLIRGRYSLDRQTEGALREGILSFEQAAARSPKFAPAYAALA
HHHHHHHHCCCCCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DGYNLLSQFGYIAPREGMEKARTAALKSLELNPRLAEGHVALAAVIEAYDWDWAAAEREY
HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCHHHHHHHH
RKALQLSPGLPAAHLWYGMFLRDQGRLKEALLELRRAAQLEPYSVVASINLACGLLLEGN
HHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHEEHHHHEEEEEECC
YSAALEQANRAVELAPELPTASLIVAHAARAAERTAESDAALERARQAASGNPHALALVA
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
CELAKLGRHEESMRVVRELEALSRQRYVSPFDLGKVSLVMGDGDQALNLFEEAFRQRSSG
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC
MIFLRNANAGCVRNLPRFRSLIEKMHFQG
EEEEECCCCHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
PVNEQLERILKSAPLISSPSLCRFLRYIVEETLAGRASEIKEYPLGVRVFDRGEDFNPR
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCC
LDPIVRVQARNLRARIARYYQGPGADDPIRIELPKGTYVPVFHQVTEEVRTADAPVAIAA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
GAEAETPVEAAVYVPPSVMPAPPPRSPVAESRQGQGLKPRFLLATVALVVILASIAVLWI
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TRTYAAARQNNADSVSEDLLIRGRYSLDRQTEGALREGILSFEQAAARSPKFAPAYAALA
HHHHHHHHCCCCCHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
DGYNLLSQFGYIAPREGMEKARTAALKSLELNPRLAEGHVALAAVIEAYDWDWAAAEREY
HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCCCHHHHHHHH
RKALQLSPGLPAAHLWYGMFLRDQGRLKEALLELRRAAQLEPYSVVASINLACGLLLEGN
HHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHEEHHHHEEEEEECC
YSAALEQANRAVELAPELPTASLIVAHAARAAERTAESDAALERARQAASGNPHALALVA
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
CELAKLGRHEESMRVVRELEALSRQRYVSPFDLGKVSLVMGDGDQALNLFEEAFRQRSSG
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC
MIFLRNANAGCVRNLPRFRSLIEKMHFQG
EEEEECCCCHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA