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The map label for this gene is 116624301

Identifier: 116624301

GI number: 116624301

Start: 6550549

End: 6551118

Strand: Reverse

Name: 116624301

Synonym: Acid_5219

Alternate gene names: NA

Gene position: 6551118-6550549 (Counterclockwise)

Preceding gene: 116624304

Following gene: 116624299

Centisome position: 65.74

GC content: 62.11

Gene sequence:

>570_bases
ATGGAGTCGACTGGAACCAACATCACGGAGTTGCTCACGGCATGGAGCGGAGGAGACGAGGTGGCGTTGGAGGCGCTTAC
GCCGCTAGTGTACAGCCACCTCCATAAGCTGGCCCGGCATTATATGGCCAGGGAACTTCCCGGCCACACGCTCCAAGCGA
CCGCGCTGGTGAATGAGGCCTATATCCGGCTGATCGACTCCGACCGGGTAGCGTGGAAGGACCGCAATCATTTCTTCGTC
CTGGCGGCGCAATTGATGCGCCGAATCCTGGTCGATTTCGCGCGCTCACACCTTAGCCAGAAGAGAGGTGGGCTTCGGCA
CCAGACCAGTTTGGATGAGGGCCTCATGGTAGCCGGTCAGCCTGACGCCGGACTGGTCGCACTAGACGATGCGCTGCTGG
CTCTGGCCGCGGTGGACCCACGGAAAGCGAAGGTCGTGGAGATGCGCTTCTTCGGCGGCCTGGAGGAGAAGGAGATCGCC
AGGGTTCTCGATATTTCCACCGATACCGTGCAGCGCGACTGGAAGGCCGCTCGCGCGTGGCTGTACGGGCAACTCGCCAA
CCAGGCCTGA

Upstream 100 bases:

>100_bases
CGGTTCAACATGTAATGATGGTGGCCGTCTAGCTTAGCCGTAGCCGGTGTCGCCCGTCGGGTAACGAGCTTCCGGCCGGC
TTTAGCGTAGGTATTGGACC

Downstream 100 bases:

>100_bases
AGGAAATCAGCTGGAGCGACGACTCCAGGAGCAATCGCCGCCTCCCTCGGCGACTTACAATCCTGCAGCAGCCCTCGCCA
ACAAATACTGCTGCACACCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MESTGTNITELLTAWSGGDEVALEALTPLVYSHLHKLARHYMARELPGHTLQATALVNEAYIRLIDSDRVAWKDRNHFFV
LAAQLMRRILVDFARSHLSQKRGGLRHQTSLDEGLMVAGQPDAGLVALDDALLALAAVDPRKAKVVEMRFFGGLEEKEIA
RVLDISTDTVQRDWKAARAWLYGQLANQA

Sequences:

>Translated_189_residues
MESTGTNITELLTAWSGGDEVALEALTPLVYSHLHKLARHYMARELPGHTLQATALVNEAYIRLIDSDRVAWKDRNHFFV
LAAQLMRRILVDFARSHLSQKRGGLRHQTSLDEGLMVAGQPDAGLVALDDALLALAAVDPRKAKVVEMRFFGGLEEKEIA
RVLDISTDTVQRDWKAARAWLYGQLANQA
>Mature_189_residues
MESTGTNITELLTAWSGGDEVALEALTPLVYSHLHKLARHYMARELPGHTLQATALVNEAYIRLIDSDRVAWKDRNHFFV
LAAQLMRRILVDFARSHLSQKRGGLRHQTSLDEGLMVAGQPDAGLVALDDALLALAAVDPRKAKVVEMRFFGGLEEKEIA
RVLDISTDTVQRDWKAARAWLYGQLANQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21057; Mature: 21057

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESTGTNITELLTAWSGGDEVALEALTPLVYSHLHKLARHYMARELPGHTLQATALVNEA
CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YIRLIDSDRVAWKDRNHFFVLAAQLMRRILVDFARSHLSQKRGGLRHQTSLDEGLMVAGQ
HHHEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
PDAGLVALDDALLALAAVDPRKAKVVEMRFFGGLEEKEIARVLDISTDTVQRDWKAARAW
CCCCEEEHHHHHHHHHHCCCCHHHEEEHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LYGQLANQA
HHHHHHCCC
>Mature Secondary Structure
MESTGTNITELLTAWSGGDEVALEALTPLVYSHLHKLARHYMARELPGHTLQATALVNEA
CCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
YIRLIDSDRVAWKDRNHFFVLAAQLMRRILVDFARSHLSQKRGGLRHQTSLDEGLMVAGQ
HHHEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
PDAGLVALDDALLALAAVDPRKAKVVEMRFFGGLEEKEIARVLDISTDTVQRDWKAARAW
CCCCEEEHHHHHHHHHHCCCCHHHEEEHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LYGQLANQA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA