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The map label for this gene is ybdA [C]

Identifier: 116622306

GI number: 116622306

Start: 4048709

End: 4049890

Strand: Reverse

Name: ybdA [C]

Synonym: Acid_3200

Alternate gene names: 116622306

Gene position: 4049890-4048709 (Counterclockwise)

Preceding gene: 116622307

Following gene: 116622305

Centisome position: 40.64

GC content: 65.23

Gene sequence:

>1182_bases
ATGACCGCGCGCTTTCTGGCGACCATCGCCGGCGAAATGCAGGCCGTGGCGGTGGCGTGGCAGATCTACGGGATCACACA
CCGGGCGCTCGACTTGGGGCTGGTTGGCCTCGCGCAATTCCTGCCGGGGATTTTTCTGTTCCTGATCGCCGGACAGGCGG
CGGACCATTTCCCGCGGCAGCGGATCTTACAGTGCTGCTATCTGGGATTCGCCGGAATATCCGCGCTCCTTCTGGGATTC
ACACTGTACGGCCTAACGTCGGTCTGGCCCGTTTATGGGGTGCTGCTGCTGAACGGCGTGGTGCGGAGCTTCAACGGGCC
GGCATCGCAATCCTTCCTGCCCCTGGTGGTGCCGGAGAAGGTCTTTCCGAACGCCGTGGCGTGGTCCTCGAGTGTGGGAC
AAGGCGGGATGATCATCGGGCCCATGATCGGCGGACTGATCTATGGAGTCACCGGGAGCCCGGCGCCGGTGTATTTTAGC
TCGATGGCGGCATGCCTGATCTCGATCGCGCTGCTCGGCGGAGTTCGGATCGAAGCCGTGCAGCGGCCGCGAGGCATCGC
GCGGCCGGGCGTCGTCCTGGACGGGCTTCGTTATCTCTGGCGCGCGAAGCTGACGCTGGGCGCGATTTCCCTGGACATGT
TCGCGGTGCTGCTCGGCGGCGCGGTGGCCTTGCTCCCCGTCTACGCGCGCGATATCTTGAAAGTCGGCGCCACGGGATTA
GGGTTCTTGCGCGGCGCACCCGGAACCGGCGCGGTGATCATGGCGATCGTGCTCGCCCACTGGCCCTTGCAGCGTCGCGC
GGGGGCGATCATGCTATGGTGCGTGGCCGGCTTCGGCGCGTTCACGCTGGTCTTCGGGCTCTCGCGCAATTTCGCGCTAT
CGGCGGCAGCTCTGGTCCTGGTGGGCGCGTGCGACATGGTCAGCGTAATTGTGCGGCACACGCTGGTGCAACTCTCCACG
CCCGATGAAATGCGCGGCCGGGTGAGCGCCGTCAATATGATTTTCATTGGGGCCTCCAATGAAGTTGGCCAGTTCGAATC
GGGGCTGACTGCCGCGTGGTTCGGGGCGGTGCCGGCGGTGGTCATCGGCGGCGTGGGGACGATCGTGATTGTCGCGCTTT
GGGCGGTACTGTTCCCCGATTTGCGCCGGGTGAACGAATTGCAACCCGCGCGGCGTCAGTGA

Upstream 100 bases:

>100_bases
GCCGGCCAGCTCGTTCCGCAGCGATCAGCCGCACTATCAGTAACGGCGAACCAACGTGAGTGGGCGCGTCGCGTTTCAAC
ATCCGAACTTTCGTTTGTAC

Downstream 100 bases:

>100_bases
CATCTATTAGACACATTCGTCATAGAGGAAGAGGTTAGCTTATGCGTAACATTTGGAAACTGACGGTAGTGCTGTTGTTC
GGGCTTGCCCTAACCGGGAA

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; MFS Permease; Membrane Transporter; Transporter Facilitator Family; Transmembrane Protein; MFS Family Transporter; Facilitator Superfamily; Facilitator MFS1 Protein; Multidrug ABC Transporter; Permease Facilitator Superfamily; Macrolide-Efflux Protein; Permease Of Facilitator Superfamily; DrugProton Antiporter; Permease Protein; Drug Resistance Efflux Protein; MFS Family Transporter Protein; Permease; Mfs Transporter; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Drug Proton Antiporter; Integral Membrane Protein MFS Transporter; Integral Membrane Protein; Facilitator Superfamily Transporter Permease; Membrame Protein; Facilitator Superfamily Multidrug Efflux Transporter; Membrane Efflux Protein MFS; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Transporter Transporter; Permeases Of Facilitator Superfamily

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MTARFLATIAGEMQAVAVAWQIYGITHRALDLGLVGLAQFLPGIFLFLIAGQAADHFPRQRILQCCYLGFAGISALLLGF
TLYGLTSVWPVYGVLLLNGVVRSFNGPASQSFLPLVVPEKVFPNAVAWSSSVGQGGMIIGPMIGGLIYGVTGSPAPVYFS
SMAACLISIALLGGVRIEAVQRPRGIARPGVVLDGLRYLWRAKLTLGAISLDMFAVLLGGAVALLPVYARDILKVGATGL
GFLRGAPGTGAVIMAIVLAHWPLQRRAGAIMLWCVAGFGAFTLVFGLSRNFALSAAALVLVGACDMVSVIVRHTLVQLST
PDEMRGRVSAVNMIFIGASNEVGQFESGLTAAWFGAVPAVVIGGVGTIVIVALWAVLFPDLRRVNELQPARRQ

Sequences:

>Translated_393_residues
MTARFLATIAGEMQAVAVAWQIYGITHRALDLGLVGLAQFLPGIFLFLIAGQAADHFPRQRILQCCYLGFAGISALLLGF
TLYGLTSVWPVYGVLLLNGVVRSFNGPASQSFLPLVVPEKVFPNAVAWSSSVGQGGMIIGPMIGGLIYGVTGSPAPVYFS
SMAACLISIALLGGVRIEAVQRPRGIARPGVVLDGLRYLWRAKLTLGAISLDMFAVLLGGAVALLPVYARDILKVGATGL
GFLRGAPGTGAVIMAIVLAHWPLQRRAGAIMLWCVAGFGAFTLVFGLSRNFALSAAALVLVGACDMVSVIVRHTLVQLST
PDEMRGRVSAVNMIFIGASNEVGQFESGLTAAWFGAVPAVVIGGVGTIVIVALWAVLFPDLRRVNELQPARRQ
>Mature_392_residues
TARFLATIAGEMQAVAVAWQIYGITHRALDLGLVGLAQFLPGIFLFLIAGQAADHFPRQRILQCCYLGFAGISALLLGFT
LYGLTSVWPVYGVLLLNGVVRSFNGPASQSFLPLVVPEKVFPNAVAWSSSVGQGGMIIGPMIGGLIYGVTGSPAPVYFSS
MAACLISIALLGGVRIEAVQRPRGIARPGVVLDGLRYLWRAKLTLGAISLDMFAVLLGGAVALLPVYARDILKVGATGLG
FLRGAPGTGAVIMAIVLAHWPLQRRAGAIMLWCVAGFGAFTLVFGLSRNFALSAAALVLVGACDMVSVIVRHTLVQLSTP
DEMRGRVSAVNMIFIGASNEVGQFESGLTAAWFGAVPAVVIGGVGTIVIVALWAVLFPDLRRVNELQPARRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41360; Mature: 41229

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARFLATIAGEMQAVAVAWQIYGITHRALDLGLVGLAQFLPGIFLFLIAGQAADHFPRQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHH
RILQCCYLGFAGISALLLGFTLYGLTSVWPVYGVLLLNGVVRSFNGPASQSFLPLVVPEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH
VFPNAVAWSSSVGQGGMIIGPMIGGLIYGVTGSPAPVYFSSMAACLISIALLGGVRIEAV
HCCCHHHCCCCCCCCCEEHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHH
QRPRGIARPGVVLDGLRYLWRAKLTLGAISLDMFAVLLGGAVALLPVYARDILKVGATGL
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GFLRGAPGTGAVIMAIVLAHWPLQRRAGAIMLWCVAGFGAFTLVFGLSRNFALSAAALVL
HHHCCCCCCHHHHHHHHHHHCCHHHCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VGACDMVSVIVRHTLVQLSTPDEMRGRVSAVNMIFIGASNEVGQFESGLTAAWFGAVPAV
HHHHHHHHHHHHHHHHHCCCCHHHHCHHEEEEEEEEECCCCCCHHHCCCHHHHHHHHHHH
VIGGVGTIVIVALWAVLFPDLRRVNELQPARRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TARFLATIAGEMQAVAVAWQIYGITHRALDLGLVGLAQFLPGIFLFLIAGQAADHFPRQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHH
RILQCCYLGFAGISALLLGFTLYGLTSVWPVYGVLLLNGVVRSFNGPASQSFLPLVVPEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH
VFPNAVAWSSSVGQGGMIIGPMIGGLIYGVTGSPAPVYFSSMAACLISIALLGGVRIEAV
HCCCHHHCCCCCCCCCEEHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHH
QRPRGIARPGVVLDGLRYLWRAKLTLGAISLDMFAVLLGGAVALLPVYARDILKVGATGL
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GFLRGAPGTGAVIMAIVLAHWPLQRRAGAIMLWCVAGFGAFTLVFGLSRNFALSAAALVL
HHHCCCCCCHHHHHHHHHHHCCHHHCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VGACDMVSVIVRHTLVQLSTPDEMRGRVSAVNMIFIGASNEVGQFESGLTAAWFGAVPAV
HHHHHHHHHHHHHHHHHCCCCHHHHCHHEEEEEEEEECCCCCCHHHCCCHHHHHHHHHHH
VIGGVGTIVIVALWAVLFPDLRRVNELQPARRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA