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The map label for this gene is 116622255

Identifier: 116622255

GI number: 116622255

Start: 3992721

End: 3993311

Strand: Direct

Name: 116622255

Synonym: Acid_3148

Alternate gene names: NA

Gene position: 3992721-3993311 (Clockwise)

Preceding gene: 116622254

Following gene: 116622256

Centisome position: 40.06

GC content: 58.88

Gene sequence:

>591_bases
GTGAACCGGTCGGCGGATCCCCAGCCGAATTCGGTCGTGCTCGTCGAGAGGATTCTCTCAGGCGACAGGAGTGCTGAAGC
GGAGTTGGTGGAGCGTTATAGCCGCGGAGTGTCTCTCATTCTGGCTCGGGGAACACGCCAGGCTTCGACCAGGGAGGATT
TACTGCAGGATACGTTTCAATTGACCATCGAGAAAATCCGGCGCGGCGAATTGCGCGATCCGGAGCGGCTCTCCGGGTTC
ATCTGCAATGTTGCCCGCAATCTGGCCGCGGATTATTACCGGCGGACTTCACGGCATGAAAGCGCGGAGCGCCGGTTTCA
GATCGATTCCGCCGGTCCCCCGGATGCGCTCCACCAAGTGCTGGCGGCGGAAAAGGCCGCCATCGTGCGGCAGATCTTGA
ATGATCTGCGCCCGACAAGGGACCGGGACTTGCTCTACCGTTTTTATATTGCCGAACAGGACAAGGAGCAGATTTGCAAG
GAATTGGGCCTGACAAGCCTGCATTTCAACCGGGTGCTGTTTCGCGCCCGGGAGCGCTATCGGGAACTCTATGAAAAACT
GGTCCAACGCCAGTCGACCGGCTTGGGATAA

Upstream 100 bases:

>100_bases
CGGCCGCTGCGCTGAGATCGGCCCAGACGTCTCTCCGAAGCGAACCAAAGTGGCAGGCGCCCTACTACTGGGCCGGCTTT
GCCTTGCAGGGCGAATGGAG

Downstream 100 bases:

>100_bases
TTCCCGGGACTGGCACACTTTAGGGATGGACCGTTATTGCCGGATACGTTGATGGATCACGGATACATCGAGGAGCACCA
GATCGTTTCGCTGTATGCGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNRSADPQPNSVVLVERILSGDRSAEAELVERYSRGVSLILARGTRQASTREDLLQDTFQLTIEKIRRGELRDPERLSGF
ICNVARNLAADYYRRTSRHESAERRFQIDSAGPPDALHQVLAAEKAAIVRQILNDLRPTRDRDLLYRFYIAEQDKEQICK
ELGLTSLHFNRVLFRARERYRELYEKLVQRQSTGLG

Sequences:

>Translated_196_residues
MNRSADPQPNSVVLVERILSGDRSAEAELVERYSRGVSLILARGTRQASTREDLLQDTFQLTIEKIRRGELRDPERLSGF
ICNVARNLAADYYRRTSRHESAERRFQIDSAGPPDALHQVLAAEKAAIVRQILNDLRPTRDRDLLYRFYIAEQDKEQICK
ELGLTSLHFNRVLFRARERYRELYEKLVQRQSTGLG
>Mature_196_residues
MNRSADPQPNSVVLVERILSGDRSAEAELVERYSRGVSLILARGTRQASTREDLLQDTFQLTIEKIRRGELRDPERLSGF
ICNVARNLAADYYRRTSRHESAERRFQIDSAGPPDALHQVLAAEKAAIVRQILNDLRPTRDRDLLYRFYIAEQDKEQICK
ELGLTSLHFNRVLFRARERYRELYEKLVQRQSTGLG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22717; Mature: 22717

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSADPQPNSVVLVERILSGDRSAEAELVERYSRGVSLILARGTRQASTREDLLQDTFQ
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHH
LTIEKIRRGELRDPERLSGFICNVARNLAADYYRRTSRHESAERRFQIDSAGPPDALHQV
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHH
LAAEKAAIVRQILNDLRPTRDRDLLYRFYIAEQDKEQICKELGLTSLHFNRVLFRARERY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
RELYEKLVQRQSTGLG
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRSADPQPNSVVLVERILSGDRSAEAELVERYSRGVSLILARGTRQASTREDLLQDTFQ
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHH
LTIEKIRRGELRDPERLSGFICNVARNLAADYYRRTSRHESAERRFQIDSAGPPDALHQV
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHH
LAAEKAAIVRQILNDLRPTRDRDLLYRFYIAEQDKEQICKELGLTSLHFNRVLFRARERY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
RELYEKLVQRQSTGLG
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA