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The map label for this gene is rbsR [H]

Identifier: 116622152

GI number: 116622152

Start: 3842975

End: 3843805

Strand: Reverse

Name: rbsR [H]

Synonym: Acid_3044

Alternate gene names: 116622152

Gene position: 3843805-3842975 (Counterclockwise)

Preceding gene: 116622154

Following gene: 116622151

Centisome position: 38.57

GC content: 64.38

Gene sequence:

>831_bases
TTGGCGGCAGGCCGCAGTTCTACCTCGGGACTGGTGGCGCCCGACATCGAAAATCCGTTCTTCCCCGAAATCATTCGCGC
ATTCCAGGAATCGACCAATCTTTCGGGACTCGAAGCGGTGGGCATGAACACGGCCTACGATGCGCAACGGACGCGCGGCG
TGATTGAGCGCCCGGTCAGCCTACAGGTCCCCGGGGCCGCCTTTTTCACCACACAGGTGGATTCCGGCATCAAGAACGCG
CTCGCCGCCAGAAACATCGCGGGCGTGTACATGGACTATGGCGACGCCGCCCCGGGTATCAGCAGCATCGCGGTGAATTA
CCCGGAGGGGATGCTGCAGGCGATCACTCATCTGCGCGACCTCGGGCACCGCCGGATCGGATTGGTCGGCGGACCCGCAC
ATGGCGCGGGAGCTCAACGCCGGAAAGCGGCGTTTCTTGAGGGTCTGAAGACTAATGGCATCGAAGGGCGGGCGACCGAG
TCCGATTTCAGCGTGCAAGGCGGTTATTTCAGCTGCTCCAAGCTGCTGGCATCCTATGACTGCACGGCCGTGATCGCGGC
CAACGACCTGATGGCGATCGGCGCGCTGCACCTGGCCTACGACCGGCAAATCGCGGTGCCCGCGCAGCTCTCGATCATCG
GCTTCGACGACATCACCTTCGCCAAGTTCACGCAGCCCGCTCTGACCACGGTCGCGGTGCCGCGGGCAGAGATCGGGCGA
GTGGCGTTCGAGTGCCGGTTGGCCCTGATGAAGGACCCGGGCGCCGCCGGAGAGAGCCACGAAATACCCACGCACCTGGT
AGTGCGCCAAACCACCGCGAGCGTGGGCTGA

Upstream 100 bases:

>100_bases
ACGTCGTGAACGAAGGCCGCAAGGTCCGTCCGGAAACGCAGAAGCGCGTGATGCTTGCCGCCAGGCGGCTGGGCTACACT
CCGAACACGGCGCGCGCAAT

Downstream 100 bases:

>100_bases
CAGCAGATCTAACCTGGAGAGGATTCCATGACGCGCTTCGCACTGATGCTGCTTGCTTCCACTGCGGCGATGGGGCAGTT
CATCCCCGAGAGACCGGTTA

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MAAGRSSTSGLVAPDIENPFFPEIIRAFQESTNLSGLEAVGMNTAYDAQRTRGVIERPVSLQVPGAAFFTTQVDSGIKNA
LAARNIAGVYMDYGDAAPGISSIAVNYPEGMLQAITHLRDLGHRRIGLVGGPAHGAGAQRRKAAFLEGLKTNGIEGRATE
SDFSVQGGYFSCSKLLASYDCTAVIAANDLMAIGALHLAYDRQIAVPAQLSIIGFDDITFAKFTQPALTTVAVPRAEIGR
VAFECRLALMKDPGAAGESHEIPTHLVVRQTTASVG

Sequences:

>Translated_276_residues
MAAGRSSTSGLVAPDIENPFFPEIIRAFQESTNLSGLEAVGMNTAYDAQRTRGVIERPVSLQVPGAAFFTTQVDSGIKNA
LAARNIAGVYMDYGDAAPGISSIAVNYPEGMLQAITHLRDLGHRRIGLVGGPAHGAGAQRRKAAFLEGLKTNGIEGRATE
SDFSVQGGYFSCSKLLASYDCTAVIAANDLMAIGALHLAYDRQIAVPAQLSIIGFDDITFAKFTQPALTTVAVPRAEIGR
VAFECRLALMKDPGAAGESHEIPTHLVVRQTTASVG
>Mature_275_residues
AAGRSSTSGLVAPDIENPFFPEIIRAFQESTNLSGLEAVGMNTAYDAQRTRGVIERPVSLQVPGAAFFTTQVDSGIKNAL
AARNIAGVYMDYGDAAPGISSIAVNYPEGMLQAITHLRDLGHRRIGLVGGPAHGAGAQRRKAAFLEGLKTNGIEGRATES
DFSVQGGYFSCSKLLASYDCTAVIAANDLMAIGALHLAYDRQIAVPAQLSIIGFDDITFAKFTQPALTTVAVPRAEIGRV
AFECRLALMKDPGAAGESHEIPTHLVVRQTTASVG

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=280, Percent_Identity=29.2857142857143, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787948, Length=279, Percent_Identity=27.2401433691756, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790194, Length=258, Percent_Identity=27.5193798449612, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1788474, Length=286, Percent_Identity=32.1678321678322, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786540, Length=193, Percent_Identity=30.5699481865285, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789202, Length=241, Percent_Identity=27.3858921161826, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789068, Length=151, Percent_Identity=32.4503311258278, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789456, Length=186, Percent_Identity=27.9569892473118, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 29051; Mature: 28920

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGRSSTSGLVAPDIENPFFPEIIRAFQESTNLSGLEAVGMNTAYDAQRTRGVIERPVS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCE
LQVPGAAFFTTQVDSGIKNALAARNIAGVYMDYGDAAPGISSIAVNYPEGMLQAITHLRD
EECCCCEEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHEEEECCHHHHHHHHHHHH
LGHRRIGLVGGPAHGAGAQRRKAAFLEGLKTNGIEGRATESDFSVQGGYFSCSKLLASYD
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHCC
CTAVIAANDLMAIGALHLAYDRQIAVPAQLSIIGFDDITFAKFTQPALTTVAVPRAEIGR
CEEEEECCCHHHHHHHHHHHCCCEECCCEEEEEECCCCCHHHHCCCHHHEEECCHHHHHH
VAFECRLALMKDPGAAGESHEIPTHLVVRQTTASVG
HHHEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
AAGRSSTSGLVAPDIENPFFPEIIRAFQESTNLSGLEAVGMNTAYDAQRTRGVIERPVS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCE
LQVPGAAFFTTQVDSGIKNALAARNIAGVYMDYGDAAPGISSIAVNYPEGMLQAITHLRD
EECCCCEEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHEEEECCHHHHHHHHHHHH
LGHRRIGLVGGPAHGAGAQRRKAAFLEGLKTNGIEGRATESDFSVQGGYFSCSKLLASYD
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHCC
CTAVIAANDLMAIGALHLAYDRQIAVPAQLSIIGFDDITFAKFTQPALTTVAVPRAEIGR
CEEEEECCCHHHHHHHHHHHCCCEECCCEEEEEECCCCCHHHHCCCHHHEEECCHHHHHH
VAFECRLALMKDPGAAGESHEIPTHLVVRQTTASVG
HHHEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]