Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 116622079

GI number: 116622079

Start: 3743826

End: 3744689

Strand: Reverse

Name: rbn [C]

Synonym: Acid_2966

Alternate gene names: 116622079

Gene position: 3744689-3743826 (Counterclockwise)

Preceding gene: 116622080

Following gene: 116622078

Centisome position: 37.58

GC content: 58.68

Gene sequence:

>864_bases
GTGACACCATTCATTGGAGAAACCCTCCGGAACTGGCACAGGGACCGAGCGCCGCGGATGGGGGCGGCGCTGGCCTACTA
CATCACCCTTTCACTGGCCCCCACGCTAGTTATTGTGCTTGCGATCGCAGGGTTGGCGTTCGGCGCGAAGGCCGCTCAGG
GACGTCTGGTGTGGCAGATCCAGGGACTGGTCGGGCACGAAGGCGCGAAAGTGATACAGGCGTTGATCGATGGCACGCGT
GCGCCATACAGCGGAATGCTCGCGACTTTGATTGGGCTCGCGACTTTGTTCTTTGGGGGAACGGCCGCCGTCACCGAACT
GCGGGATGCGCTGAACACGATTTGGCAGATCCCCGACGACGTGCAGGCCAGCCATGCGCGCAACCTCTTCAATGTCATCA
AGGAACGATTCCAGGCTTTTGCGCTGGTGCTCGTGGCCGGAGTGGTCCTGCTGCTTTCTGTAATACTTCATGCGTGGATT
TCGGCCGCCGTCAAATATTTTCGGCTGGCCGGTACGGCGCCGCCCGTTCTGATTCACTCCTTTGATTGGTCAGTTTCGTT
CGCTCTCCTCACCCTCCTGTTCGCGTCCATTTTCAAATTTCTGCCCGCCGTAGACTTGAAGTGGCAAGACGTGGCGGCGG
GGGCTGTAGTCACGTCGATTTTGTTCACCGCCGGGAAGTTCTTTCTGGGCGTTTATCTGACCGAGGCCGGATTCGCGGAG
AACTACGGCGCGGCGGGGTCACTGGTGATGCTGTTGGTGTGGGTCTATTATTCGGCCCAAGTAGTCTTCCTCGGAGCAGA
ATTCACGCAAGTTTATGCGATCCGCTTCGGCTCGCTCGCGATCGAGAAAACCTCACCGTTATGA

Upstream 100 bases:

>100_bases
TGCTGGCGATCGTAGTCGTGCTGATTCGTGTGATTCAGGGACGGAGGGCTATATAACAGAGTCCGGGATCAGATCGAGAC
GTCCATTCCCGTTCAAAGAA

Downstream 100 bases:

>100_bases
TCAAACCTCAACGCCTCGCGGTTTCTTCCAGCATCAGAACCGCTGGAATTCTCATTGGCGTCATCTTCGTCTTGTACGCC
GCCCGTGAGATCTTTGTCCC

Product: ribonuclease BN

Products: NA

Alternate protein names: Ribonuclease; Ribonuclease Bn; YihY Family Protein; Exoribonuclease II; Ribonuclease BN-Like Family Protein; Ribonuclease RNAse BN Transmembrane Protein; Ribonuclease BN Family Protein; Ribonuclease RN; BrkB-Like Serum-Resistance Protein; Exoribonuclease BN Transmembrane Protein; TRNA-Processing RNAse BN; Ribonuclease BN-Like Family; BrkB Transmembrane Protein; BrkB-Like Protein; Ribonuclease BN Family; Serum Resistance Protein; BrkB Protein; RNAse BN; Ribonuclease BN Falily; Serum Resistance Locus; Serum Resistance Protein BrkB

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTPFIGETLRNWHRDRAPRMGAALAYYITLSLAPTLVIVLAIAGLAFGAKAAQGRLVWQIQGLVGHEGAKVIQALIDGTR
APYSGMLATLIGLATLFFGGTAAVTELRDALNTIWQIPDDVQASHARNLFNVIKERFQAFALVLVAGVVLLLSVILHAWI
SAAVKYFRLAGTAPPVLIHSFDWSVSFALLTLLFASIFKFLPAVDLKWQDVAAGAVVTSILFTAGKFFLGVYLTEAGFAE
NYGAAGSLVMLLVWVYYSAQVVFLGAEFTQVYAIRFGSLAIEKTSPL

Sequences:

>Translated_287_residues
MTPFIGETLRNWHRDRAPRMGAALAYYITLSLAPTLVIVLAIAGLAFGAKAAQGRLVWQIQGLVGHEGAKVIQALIDGTR
APYSGMLATLIGLATLFFGGTAAVTELRDALNTIWQIPDDVQASHARNLFNVIKERFQAFALVLVAGVVLLLSVILHAWI
SAAVKYFRLAGTAPPVLIHSFDWSVSFALLTLLFASIFKFLPAVDLKWQDVAAGAVVTSILFTAGKFFLGVYLTEAGFAE
NYGAAGSLVMLLVWVYYSAQVVFLGAEFTQVYAIRFGSLAIEKTSPL
>Mature_286_residues
TPFIGETLRNWHRDRAPRMGAALAYYITLSLAPTLVIVLAIAGLAFGAKAAQGRLVWQIQGLVGHEGAKVIQALIDGTRA
PYSGMLATLIGLATLFFGGTAAVTELRDALNTIWQIPDDVQASHARNLFNVIKERFQAFALVLVAGVVLLLSVILHAWIS
AAVKYFRLAGTAPPVLIHSFDWSVSFALLTLLFASIFKFLPAVDLKWQDVAAGAVVTSILFTAGKFFLGVYLTEAGFAEN
YGAAGSLVMLLVWVYYSAQVVFLGAEFTQVYAIRFGSLAIEKTSPL

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.-.- [C]

Molecular weight: Translated: 30985; Mature: 30854

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPFIGETLRNWHRDRAPRMGAALAYYITLSLAPTLVIVLAIAGLAFGAKAAQGRLVWQI
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEE
QGLVGHEGAKVIQALIDGTRAPYSGMLATLIGLATLFFGGTAAVTELRDALNTIWQIPDD
ECHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH
VQASHARNLFNVIKERFQAFALVLVAGVVLLLSVILHAWISAAVKYFRLAGTAPPVLIHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
FDWSVSFALLTLLFASIFKFLPAVDLKWQDVAAGAVVTSILFTAGKFFLGVYLTEAGFAE
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NYGAAGSLVMLLVWVYYSAQVVFLGAEFTQVYAIRFGSLAIEKTSPL
CCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCEEECCCCCC
>Mature Secondary Structure 
TPFIGETLRNWHRDRAPRMGAALAYYITLSLAPTLVIVLAIAGLAFGAKAAQGRLVWQI
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEE
QGLVGHEGAKVIQALIDGTRAPYSGMLATLIGLATLFFGGTAAVTELRDALNTIWQIPDD
ECHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH
VQASHARNLFNVIKERFQAFALVLVAGVVLLLSVILHAWISAAVKYFRLAGTAPPVLIHS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
FDWSVSFALLTLLFASIFKFLPAVDLKWQDVAAGAVVTSILFTAGKFFLGVYLTEAGFAE
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NYGAAGSLVMLLVWVYYSAQVVFLGAEFTQVYAIRFGSLAIEKTSPL
CCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA