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The map label for this gene is nodV [H]

Identifier: 116621917

GI number: 116621917

Start: 3550070

End: 3552022

Strand: Reverse

Name: nodV [H]

Synonym: Acid_2802

Alternate gene names: 116621917

Gene position: 3552022-3550070 (Counterclockwise)

Preceding gene: 116621918

Following gene: 116621915

Centisome position: 35.64

GC content: 63.18

Gene sequence:

>1953_bases
ATGACTGGAAACTACAGCATTCTCGTAGTTGACGATGAATCGGAATCGCTGCTGCTCCTGACCGATCTCCTGGCCGCCGC
AGGCTATCGCGTACGCTCGGCCAACAGCGGACGACTCGCCCTCGCCTCCGCCAAAGCATCACAGCCGCACCTCATCCTCG
TCGATATCCATATTCCCGATATCGACGGCTTCGAACTCTGCCGCCGCTTCAAATCGGAAGTCGCCACCCGCCAAATCCCC
CTGATCTTCATCAGCGGCGCCGGCGAAGTTGAAGAGCGCGTCGCCGGGCTTGCCTTAGGTGCCGTCGATTACATCGGCAA
GCCCTTCCTCCGCGAGGAGCTTCTCGCCCGCGTCCGAACCCACCTGGAACTCGGCCGCCTTCGCTCCGACCTTGAACTTC
AAATGGCCGCCCGCACGCAGGAGTTACACGCCACCATCGAACGCCTCCGAGAGAGCGAGGAGCGTTTTCGTAATATGGCG
GACTCCGCCCCCGTCATGATCTGGATTTCCGCGCCCAACAAGCTCTGCACGTTTTTTAACAGCGGCTGGCTCAGCTTCAC
GGGCCGCAGTATGGAGCAGGAGCTCGGCGACGGTTGGGCGGCCGGCGTCCATCCCGATGACCTGGAGCGCGTCGTCAAGG
TCTATTCATCATCGTTCGACGCGCGCCGCAGTTTCGAAATCGAGTACCGCCTGCGCCGCGCCGATGGCGAATACCGCTGG
ATCCTGGATCGCGGCGCTCCGCGCTGCGCCGCCGCCGGCGAGTTCGCCGGCTACATCGGCACCGCGATCGATATCACAGA
CCTCCGGCGGACCCAGGAAGAAGCCCTTTCCCGCGAAAAGCTCGATAGCCTCGCCGTCCTCACCCGCGGCATCGCGCACG
ATTTCAACAACCTGATGGGCAGCATCCTCGCTGAGGCCGAAGTAGCCGACGCCGAGCTTGACCAGGGACTTTCCCCCCGC
GAGGAACTCCGCCAGATAAAACGGGTCGCGGTCCGCGCTTCCGAGGTGGTTCGCGAATTGATGATCTATTCCGGCCAGGA
ACACACCAGCTTCGAAACCGTGAAACTCTCCGCGCTCGTCGAGGAAATGCTTGAGCTGCTCCGCGTCTCCATATCCAAGC
GCGCTGTCCTTCACGTGGATCTGCGGCCGGACCTGCCCGCCGTGCGCGGCAATCCCACCCAAATCCGTCAGATCGTCATG
AACCTGATTATCAATGCTTCCCAGGCCATTGGCGAAGCCCACGGAGAGATCTGCGTCAGGACTTCCCTTGCACCCAATTC
TCCGCACGATTACGTTCGCCTCGAAATCTCCGATACTGGCTGCGGCATCTCCGACGAAGAGCGCGCCAAGATCTTCGATC
CCTTCTTCACACGTAAGCCAGGCGGCCACGGGCTCGGCCTCGCCGTGGTGCAAGGTATCGTGGCAGCCCACAAAGGCGTC
ATCAACGTGATGAGCAAACCGGGCAAGGGAGCCACCTTCGAGGTTCTCCTGCCCCTCGCCGAGACTCTCGCCGAATCACC
TGCTCCTTTCCCCGCCACCGCTGCGCCGGAGTCGGCACGGGCCCTCCGCGGCGCCGTGCTGCTGGTGGAAGACGAGGATA
CCCTTCAGCTCGCCACCTCCAAAGCCCTGCGGAAACGCGGCTTCTCCGTCCTCGTCGCCCGCGATGGATGGGCCGCCGTC
GAGCTGTTTCGCGCGCATGCGGATCAAATCGGAGTCGTGCTCCTGGATCTCACCCTGCCCGGCATCCCCGGCCGTGAGGT
CCTCCGCCAGATCCGCGCCATCAAGCGCGATGTCAGAGTGGTTCTCACCAGCGCCTACGATCAGAATCTTCCGCCCAACG
CCAAACACAGCGAACTCCCCTCCGCCTTCCTGCGCAAACCCTACGGTGTCGCCGACCTGGTCCGCGGCCTCGAGGCCGCC
TGTTCCGCCCCTCCGCAAGACCTCGCGTCCTGA

Upstream 100 bases:

>100_bases
CTCAGTTGGGCCGAATCCTCACGCACTATTCCGAGCGTTTGGCGTATGCTCAAATCCTGGACGCTCTGGAGTTGGAGTAC
GGACTTGCGGGCGGTGCTTG

Downstream 100 bases:

>100_bases
TCCTCTAGCTCACGTGAGCGCCGCGCGTTCCCACATACACCGAGTACAAACTCTGGCTCGCCAGCATGAACAGCCGGTTC
CGCTTTGCCCCGCCGAAACA

Product: PAS/PAC sensor hybrid histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 649

Protein sequence:

>650_residues
MTGNYSILVVDDESESLLLLTDLLAAAGYRVRSANSGRLALASAKASQPHLILVDIHIPDIDGFELCRRFKSEVATRQIP
LIFISGAGEVEERVAGLALGAVDYIGKPFLREELLARVRTHLELGRLRSDLELQMAARTQELHATIERLRESEERFRNMA
DSAPVMIWISAPNKLCTFFNSGWLSFTGRSMEQELGDGWAAGVHPDDLERVVKVYSSSFDARRSFEIEYRLRRADGEYRW
ILDRGAPRCAAAGEFAGYIGTAIDITDLRRTQEEALSREKLDSLAVLTRGIAHDFNNLMGSILAEAEVADAELDQGLSPR
EELRQIKRVAVRASEVVRELMIYSGQEHTSFETVKLSALVEEMLELLRVSISKRAVLHVDLRPDLPAVRGNPTQIRQIVM
NLIINASQAIGEAHGEICVRTSLAPNSPHDYVRLEISDTGCGISDEERAKIFDPFFTRKPGGHGLGLAVVQGIVAAHKGV
INVMSKPGKGATFEVLLPLAETLAESPAPFPATAAPESARALRGAVLLVEDEDTLQLATSKALRKRGFSVLVARDGWAAV
ELFRAHADQIGVVLLDLTLPGIPGREVLRQIRAIKRDVRVVLTSAYDQNLPPNAKHSELPSAFLRKPYGVADLVRGLEAA
CSAPPQDLAS

Sequences:

>Translated_650_residues
MTGNYSILVVDDESESLLLLTDLLAAAGYRVRSANSGRLALASAKASQPHLILVDIHIPDIDGFELCRRFKSEVATRQIP
LIFISGAGEVEERVAGLALGAVDYIGKPFLREELLARVRTHLELGRLRSDLELQMAARTQELHATIERLRESEERFRNMA
DSAPVMIWISAPNKLCTFFNSGWLSFTGRSMEQELGDGWAAGVHPDDLERVVKVYSSSFDARRSFEIEYRLRRADGEYRW
ILDRGAPRCAAAGEFAGYIGTAIDITDLRRTQEEALSREKLDSLAVLTRGIAHDFNNLMGSILAEAEVADAELDQGLSPR
EELRQIKRVAVRASEVVRELMIYSGQEHTSFETVKLSALVEEMLELLRVSISKRAVLHVDLRPDLPAVRGNPTQIRQIVM
NLIINASQAIGEAHGEICVRTSLAPNSPHDYVRLEISDTGCGISDEERAKIFDPFFTRKPGGHGLGLAVVQGIVAAHKGV
INVMSKPGKGATFEVLLPLAETLAESPAPFPATAAPESARALRGAVLLVEDEDTLQLATSKALRKRGFSVLVARDGWAAV
ELFRAHADQIGVVLLDLTLPGIPGREVLRQIRAIKRDVRVVLTSAYDQNLPPNAKHSELPSAFLRKPYGVADLVRGLEAA
CSAPPQDLAS
>Mature_649_residues
TGNYSILVVDDESESLLLLTDLLAAAGYRVRSANSGRLALASAKASQPHLILVDIHIPDIDGFELCRRFKSEVATRQIPL
IFISGAGEVEERVAGLALGAVDYIGKPFLREELLARVRTHLELGRLRSDLELQMAARTQELHATIERLRESEERFRNMAD
SAPVMIWISAPNKLCTFFNSGWLSFTGRSMEQELGDGWAAGVHPDDLERVVKVYSSSFDARRSFEIEYRLRRADGEYRWI
LDRGAPRCAAAGEFAGYIGTAIDITDLRRTQEEALSREKLDSLAVLTRGIAHDFNNLMGSILAEAEVADAELDQGLSPRE
ELRQIKRVAVRASEVVRELMIYSGQEHTSFETVKLSALVEEMLELLRVSISKRAVLHVDLRPDLPAVRGNPTQIRQIVMN
LIINASQAIGEAHGEICVRTSLAPNSPHDYVRLEISDTGCGISDEERAKIFDPFFTRKPGGHGLGLAVVQGIVAAHKGVI
NVMSKPGKGATFEVLLPLAETLAESPAPFPATAAPESARALRGAVLLVEDEDTLQLATSKALRKRGFSVLVARDGWAAVE
LFRAHADQIGVVLLDLTLPGIPGREVLRQIRAIKRDVRVVLTSAYDQNLPPNAKHSELPSAFLRKPYGVADLVRGLEAAC
SAPPQDLAS

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process. NodV may function as a membrane-associated protein kinase that phosphorylates nodW in response to

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=248, Percent_Identity=33.8709677419355, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1790436, Length=232, Percent_Identity=34.4827586206897, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI48994928, Length=519, Percent_Identity=26.3969171483622, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081816, Length=335, Percent_Identity=28.0597014925373, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1790300, Length=239, Percent_Identity=27.6150627615063, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1789809, Length=123, Percent_Identity=41.4634146341463, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1786784, Length=120, Percent_Identity=40, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1788713, Length=223, Percent_Identity=26.457399103139, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI145693157, Length=140, Percent_Identity=33.5714285714286, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788394, Length=130, Percent_Identity=36.1538461538462, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788550, Length=131, Percent_Identity=35.1145038167939, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786599, Length=113, Percent_Identity=37.1681415929204, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87082012, Length=116, Percent_Identity=36.2068965517241, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1790860, Length=117, Percent_Identity=35.042735042735, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1789149, Length=241, Percent_Identity=26.1410788381743, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790346, Length=189, Percent_Identity=27.5132275132275, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790552, Length=117, Percent_Identity=35.8974358974359, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1786911, Length=117, Percent_Identity=35.8974358974359, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082128, Length=222, Percent_Identity=26.1261261261261, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1786912, Length=254, Percent_Identity=24.4094488188976, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1789808, Length=230, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1790437, Length=106, Percent_Identity=35.8490566037736, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786600, Length=219, Percent_Identity=23.7442922374429, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 71284; Mature: 71153

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGNYSILVVDDESESLLLLTDLLAAAGYRVRSANSGRLALASAKASQPHLILVDIHIPD
CCCCEEEEEEECCCCCCHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCEEEEEEECCC
IDGFELCRRFKSEVATRQIPLIFISGAGEVEERVAGLALGAVDYIGKPFLREELLARVRT
CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
HLELGRLRSDLELQMAARTQELHATIERLRESEERFRNMADSAPVMIWISAPNKLCTFFN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHC
SGWLSFTGRSMEQELGDGWAAGVHPDDLERVVKVYSSSFDARRSFEIEYRLRRADGEYRW
CCCEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEE
ILDRGAPRCAAAGEFAGYIGTAIDITDLRRTQEEALSREKLDSLAVLTRGIAHDFNNLMG
EEECCCCCCCCCCHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SILAEAEVADAELDQGLSPREELRQIKRVAVRASEVVRELMIYSGQEHTSFETVKLSALV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EEMLELLRVSISKRAVLHVDLRPDLPAVRGNPTQIRQIVMNLIINASQAIGEAHGEICVR
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TSLAPNSPHDYVRLEISDTGCGISDEERAKIFDPFFTRKPGGHGLGLAVVQGIVAAHKGV
ECCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
INVMSKPGKGATFEVLLPLAETLAESPAPFPATAAPESARALRGAVLLVEDEDTLQLATS
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEEECCCHHHHHHH
KALRKRGFSVLVARDGWAAVELFRAHADQIGVVLLDLTLPGIPGREVLRQIRAIKRDVRV
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
VLTSAYDQNLPPNAKHSELPSAFLRKPYGVADLVRGLEAACSAPPQDLAS
HHHHHHCCCCCCCCCHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure 
TGNYSILVVDDESESLLLLTDLLAAAGYRVRSANSGRLALASAKASQPHLILVDIHIPD
CCCEEEEEEECCCCCCHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCEEEEEEECCC
IDGFELCRRFKSEVATRQIPLIFISGAGEVEERVAGLALGAVDYIGKPFLREELLARVRT
CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
HLELGRLRSDLELQMAARTQELHATIERLRESEERFRNMADSAPVMIWISAPNKLCTFFN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHC
SGWLSFTGRSMEQELGDGWAAGVHPDDLERVVKVYSSSFDARRSFEIEYRLRRADGEYRW
CCCEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEE
ILDRGAPRCAAAGEFAGYIGTAIDITDLRRTQEEALSREKLDSLAVLTRGIAHDFNNLMG
EEECCCCCCCCCCHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SILAEAEVADAELDQGLSPREELRQIKRVAVRASEVVRELMIYSGQEHTSFETVKLSALV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EEMLELLRVSISKRAVLHVDLRPDLPAVRGNPTQIRQIVMNLIINASQAIGEAHGEICVR
HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
TSLAPNSPHDYVRLEISDTGCGISDEERAKIFDPFFTRKPGGHGLGLAVVQGIVAAHKGV
ECCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
INVMSKPGKGATFEVLLPLAETLAESPAPFPATAAPESARALRGAVLLVEDEDTLQLATS
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEEEECCCHHHHHHH
KALRKRGFSVLVARDGWAAVELFRAHADQIGVVLLDLTLPGIPGREVLRQIRAIKRDVRV
HHHHHCCCEEEEECCCHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
VLTSAYDQNLPPNAKHSELPSAFLRKPYGVADLVRGLEAACSAPPQDLAS
HHHHHHCCCCCCCCCHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]