Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
---|---|
Accession | NC_008536 |
Length | 9,965,640 |
Click here to switch to the map view.
The map label for this gene is 116621497
Identifier: 116621497
GI number: 116621497
Start: 3029365
End: 3032004
Strand: Direct
Name: 116621497
Synonym: Acid_2379
Alternate gene names: NA
Gene position: 3029365-3032004 (Clockwise)
Preceding gene: 116621495
Following gene: 116621498
Centisome position: 30.4
GC content: 66.21
Gene sequence:
>2640_bases TTGTTGGTTGCTGGGATCACCGGTTTAGTTGGTGTTATGTGGCTCAGTGCACAGATTCCCCTGGCCGACCGGCTGCTGGC GGCAGGTACGCCGCAGGGCGTCGAGGAGATCTTGAATGCGGCGCCGGGGGAGGTCACGCACGACGTCTTTACCGCGTGCC GGAATGCGGCGCAGGCGACGCTGGAGCGCGGATCGCCGGCTGCGTTGAAGCAGTTCCAGACGGCGCTGGCGGTGGCGGAG CGAGTGAATTCGCCCGCCGATGTAGCGGCGGCCCTGTTGGGTGTGGGGATCTCGCAATCGCGGCAGAACCAGAACATTGC CTCGCTCACCACCTTTGATAAAGGATACCCGCTGGCCGTACAGGCGGGTGACCAGGCACTTCAGGCGCACTACCTACGGG CGCGGGGGGTCGCGTACAGCACGCTGGGACGGTTCGCGGAAGGGTTGGCGGAGAACGCCAGGAGCCTGGCGCTGTATCGC GAGATCAAAGATAATCGCGGAGCTTCGTTCGTCCTCAGTAACACCTGCGCGGCGCATCGCGTGATGGGAGACTTGCGGCG AGCAGCGGCGGAATGCGAGGAGGCCTACCAGTTGAGCAAGGGGCTGACGGACGGGGTCGCGGCCGGAGTCGGGCTAGGCA ATCTGGGACCGGTCGCAGCGGAGCAGGGGAACTTCGCGGCGGCGCGGGAGTACCTGGAGGAATCGATCCGGCTGCATCAG GAGAAGGGCGATCTGCGGCTGCTGGGTACGTCGCTGCTGAATATCGGTCCGGTTTACAAAGGGCTCGGTGAATATGAGAA GGCGTTCGCGGCGTACGAACGGGCGGTTGCATTGACCGCGCAGGTCAACGATTTTTCGGGGCGCTCGATGGCGCTGTTCA ATCGCGCGGCGCTGTATACGTCTTTGCACCGGTATGACGAAGCGCTGAAGGATCTTCGCGAGGGACTGGCGCAGCGGGAG AAATTCGATTCGAAATATCAGACCGGGTACGGCCTGGTCAACATCTCGCGGCTGGAAAGCTACCTGGGCGACACCGACGG CGGATGCCGGGATGCGGAGCAGGCGCTCGAAATCGGCCGGCAATATCAGTCGGGTCACTTGACCTGGGCGGCGCTGAATG CGCGCGGCGTGTGCGAGATGAAGCGCAAGAACATCGCGAAGGCGCGGGAGATGCTGGAAGGCGCGGTGGCGCAGATCGAA TCGGTGCGCGGGCTGGCGGGCGGGGGAGACCAGACCGGGCAGAGTTTCATGACGGACAAGATCGAGCCGTACCACAATCT GCTGCGCGTGCAGTTGGAACTGGGGCAGCCGGAGCAGGCTTTCGCGACCGCGGAGCGGGCACGGGCGCGGCAACTGGTGG ATGCGGTGCGGCGGGGAAAGACGCAAACGGTGCTCTCCATGACGGCGGAGGAGCAGCGCGAGGAGAAGCGTCTCGGCGAC GCACTGGCGCGGCTCGATGGCCGGGTGGCGGCGAGTTCGGGCGCGGCGAAAACCGAAGCCCTGGCGGCGTGGGACAAGGC GAAGCGTGATTTCGAAGCCTTCCGCGCGCACCTGTATGCGGTACATCCGGAACTGGAGGCCCGGCGCGGAGAAGCGCCGC CGCTGACCATCGCGGAGACGGCGGACCTGCTGCCGGACGCGGGCACGGTGGCGATTGAATTCGCGGTGCTGAACAATTCG ATCCGGATCTTCACGGTGGAGCACGGGGCGGACGGGAAGCCCTCACTGAAGACGCACACGGTGGAGTGGGACCGCGATGC GCTCGGCAAGGACGTGCTGGCATTCCGCGAGCAACTGGCGAATCGCGACCTGGAGTATCGCACCGCGGCGGCCGCGCTCT ACCGCAAGCTGTTGGGTCCGGCGGCGGCGGAACTGCGAGGCAAATCGACGATCGTGGTGGTGCCCGACGGAGTGCTGTGG AACCTGCCGTTCCAGGCGCTGGTGCGGCCGGACGGAGCGCATTTGCTGGAGCGGCAGACGGTGTTCTACGCGCCCTCGCT CACGTTCCTGCGGCAGGACCGGCGGAGCGGCGGACCGGCGGGCAGGGAACTGCTGGCGATGGGAAATCCCGGGGCGGCCA ACTTGCCGAATGCGGCGCGGGAAGTTCAGACGCTGGCGAAGCTCTACGATGCGGGCGGGGCGCTTGCGCTGACCGGGGCG GCCGCGACGAAAGACGCGTGGCTGCGGGACGCGCCGAACTACCGGCTGCTGCACCTGGCGACACACGGCGTCCTCAATCC GGCGAACCCGATGTACTCGTGGCTGGCGCTGGCGCCGGGGGCGAAGGACGCGAGCGACGATGCGCTGGAGGCGCGGGAGA TTGTCGCGATGAATCTGCATGCGGACCTGGCAGTACTCTCGGCGTGCGATACGGGCCGCGGCCTGGTGATGGCGGGCGAA GGCCTGGTGGGCATGAGCTGGGCGTTCCTGGCGGCGGGTACACGGACAACGGTGGTGAGCCAGTGGAAGGTGGAATCGGC GAGCACGACGGACATGATGCTGGCGTTTCACCGGAATTTGAAGCAGGAGATGGGGAGAGCGCGGTCGCTGCAGAGGGCGA TGGTGGCGACGATGCGAACGCCGGAGAGGCGGCATCCTTACTACTGGGCGGGGTTCGTGATGATTGGGAATGGTTACTGA
Upstream 100 bases:
>100_bases GGCCAGGAGCAAGACTGCCAATCGCATCATTATTCCTAATACCACTGGCGGATTGACAGGCGGGTAGAGACCCCGTAGCC TTTGATACATGCGGAGTTTG
Downstream 100 bases:
>100_bases ACATAAACGCAGGTTGACGCCGATAAGCAAAACGTGAAGGATAGAACGGTGGGTCGGTAGGTGCTGCTACTTACGGGATG ACACGCCTATTACTTGCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Repeat Family; Tetratricopeptide Repeat Family Protein; Tetratricopeptide Tpr_1 Repeat-Containing Protein; Tetratricopeptide Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Domain Protein; Tetratricopeptide Region; WD-40 Repeat-Containing Protein; TPR Domain-Containing Protein; Tetratricopeptide Protein; Histidine Kinase; Tetratricopeptide Tpr_3 Repeat-Containing Protein; Kinesin Light Chain; Tetratricopeptide Repeat-Containing Protein; Peptidase Domain-Containing Protein; Hemagglutination Activity Domain-Containing Protein; Peptidase Domain Protein; Sel1 Domain-Containing Protein; Haemagglutination Activity Domain Protein; Peptidase-Like; Fis Family Transcriptional Regulator
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MLVAGITGLVGVMWLSAQIPLADRLLAAGTPQGVEEILNAAPGEVTHDVFTACRNAAQATLERGSPAALKQFQTALAVAE RVNSPADVAAALLGVGISQSRQNQNIASLTTFDKGYPLAVQAGDQALQAHYLRARGVAYSTLGRFAEGLAENARSLALYR EIKDNRGASFVLSNTCAAHRVMGDLRRAAAECEEAYQLSKGLTDGVAAGVGLGNLGPVAAEQGNFAAAREYLEESIRLHQ EKGDLRLLGTSLLNIGPVYKGLGEYEKAFAAYERAVALTAQVNDFSGRSMALFNRAALYTSLHRYDEALKDLREGLAQRE KFDSKYQTGYGLVNISRLESYLGDTDGGCRDAEQALEIGRQYQSGHLTWAALNARGVCEMKRKNIAKAREMLEGAVAQIE SVRGLAGGGDQTGQSFMTDKIEPYHNLLRVQLELGQPEQAFATAERARARQLVDAVRRGKTQTVLSMTAEEQREEKRLGD ALARLDGRVAASSGAAKTEALAAWDKAKRDFEAFRAHLYAVHPELEARRGEAPPLTIAETADLLPDAGTVAIEFAVLNNS IRIFTVEHGADGKPSLKTHTVEWDRDALGKDVLAFREQLANRDLEYRTAAAALYRKLLGPAAAELRGKSTIVVVPDGVLW NLPFQALVRPDGAHLLERQTVFYAPSLTFLRQDRRSGGPAGRELLAMGNPGAANLPNAAREVQTLAKLYDAGGALALTGA AATKDAWLRDAPNYRLLHLATHGVLNPANPMYSWLALAPGAKDASDDALEAREIVAMNLHADLAVLSACDTGRGLVMAGE GLVGMSWAFLAAGTRTTVVSQWKVESASTTDMMLAFHRNLKQEMGRARSLQRAMVATMRTPERRHPYYWAGFVMIGNGY
Sequences:
>Translated_879_residues MLVAGITGLVGVMWLSAQIPLADRLLAAGTPQGVEEILNAAPGEVTHDVFTACRNAAQATLERGSPAALKQFQTALAVAE RVNSPADVAAALLGVGISQSRQNQNIASLTTFDKGYPLAVQAGDQALQAHYLRARGVAYSTLGRFAEGLAENARSLALYR EIKDNRGASFVLSNTCAAHRVMGDLRRAAAECEEAYQLSKGLTDGVAAGVGLGNLGPVAAEQGNFAAAREYLEESIRLHQ EKGDLRLLGTSLLNIGPVYKGLGEYEKAFAAYERAVALTAQVNDFSGRSMALFNRAALYTSLHRYDEALKDLREGLAQRE KFDSKYQTGYGLVNISRLESYLGDTDGGCRDAEQALEIGRQYQSGHLTWAALNARGVCEMKRKNIAKAREMLEGAVAQIE SVRGLAGGGDQTGQSFMTDKIEPYHNLLRVQLELGQPEQAFATAERARARQLVDAVRRGKTQTVLSMTAEEQREEKRLGD ALARLDGRVAASSGAAKTEALAAWDKAKRDFEAFRAHLYAVHPELEARRGEAPPLTIAETADLLPDAGTVAIEFAVLNNS IRIFTVEHGADGKPSLKTHTVEWDRDALGKDVLAFREQLANRDLEYRTAAAALYRKLLGPAAAELRGKSTIVVVPDGVLW NLPFQALVRPDGAHLLERQTVFYAPSLTFLRQDRRSGGPAGRELLAMGNPGAANLPNAAREVQTLAKLYDAGGALALTGA AATKDAWLRDAPNYRLLHLATHGVLNPANPMYSWLALAPGAKDASDDALEAREIVAMNLHADLAVLSACDTGRGLVMAGE GLVGMSWAFLAAGTRTTVVSQWKVESASTTDMMLAFHRNLKQEMGRARSLQRAMVATMRTPERRHPYYWAGFVMIGNGY >Mature_879_residues MLVAGITGLVGVMWLSAQIPLADRLLAAGTPQGVEEILNAAPGEVTHDVFTACRNAAQATLERGSPAALKQFQTALAVAE RVNSPADVAAALLGVGISQSRQNQNIASLTTFDKGYPLAVQAGDQALQAHYLRARGVAYSTLGRFAEGLAENARSLALYR EIKDNRGASFVLSNTCAAHRVMGDLRRAAAECEEAYQLSKGLTDGVAAGVGLGNLGPVAAEQGNFAAAREYLEESIRLHQ EKGDLRLLGTSLLNIGPVYKGLGEYEKAFAAYERAVALTAQVNDFSGRSMALFNRAALYTSLHRYDEALKDLREGLAQRE KFDSKYQTGYGLVNISRLESYLGDTDGGCRDAEQALEIGRQYQSGHLTWAALNARGVCEMKRKNIAKAREMLEGAVAQIE SVRGLAGGGDQTGQSFMTDKIEPYHNLLRVQLELGQPEQAFATAERARARQLVDAVRRGKTQTVLSMTAEEQREEKRLGD ALARLDGRVAASSGAAKTEALAAWDKAKRDFEAFRAHLYAVHPELEARRGEAPPLTIAETADLLPDAGTVAIEFAVLNNS IRIFTVEHGADGKPSLKTHTVEWDRDALGKDVLAFREQLANRDLEYRTAAAALYRKLLGPAAAELRGKSTIVVVPDGVLW NLPFQALVRPDGAHLLERQTVFYAPSLTFLRQDRRSGGPAGRELLAMGNPGAANLPNAAREVQTLAKLYDAGGALALTGA AATKDAWLRDAPNYRLLHLATHGVLNPANPMYSWLALAPGAKDASDDALEAREIVAMNLHADLAVLSACDTGRGLVMAGE GLVGMSWAFLAAGTRTTVVSQWKVESASTTDMMLAFHRNLKQEMGRARSLQRAMVATMRTPERRHPYYWAGFVMIGNGY
Specific function: Unknown
COG id: COG4995
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI224028289, Length=415, Percent_Identity=23.3734939759036, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI164519122, Length=278, Percent_Identity=28.0575539568345, Blast_Score=70, Evalue=1e-11, Organism=Drosophila melanogaster, GI24660950, Length=299, Percent_Identity=28.0936454849498, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94850; Mature: 94850
Theoretical pI: Translated: 7.48; Mature: 7.48
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVAGITGLVGVMWLSAQIPLADRLLAAGTPQGVEEILNAAPGEVTHDVFTACRNAAQAT CEECCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LERGSPAALKQFQTALAVAERVNSPADVAAALLGVGISQSRQNQNIASLTTFDKGYPLAV HHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCHHEEECCCCCCEEE QAGDQALQAHYLRARGVAYSTLGRFAEGLAENARSLALYREIKDNRGASFVLSNTCAAHR ECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH VMGDLRRAAAECEEAYQLSKGLTDGVAAGVGLGNLGPVAAEQGNFAAAREYLEESIRLHQ HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH EKGDLRLLGTSLLNIGPVYKGLGEYEKAFAAYERAVALTAQVNDFSGRSMALFNRAALYT CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHH SLHRYDEALKDLREGLAQREKFDSKYQTGYGLVNISRLESYLGDTDGGCRDAEQALEIGR HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHH QYQSGHLTWAALNARGVCEMKRKNIAKAREMLEGAVAQIESVRGLAGGGDQTGQSFMTDK HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC IEPYHNLLRVQLELGQPEQAFATAERARARQLVDAVRRGKTQTVLSMTAEEQREEKRLGD CHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH ALARLDGRVAASSGAAKTEALAAWDKAKRDFEAFRAHLYAVHPELEARRGEAPPLTIAET HHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCCEEHHHH ADLLPDAGTVAIEFAVLNNSIRIFTVEHGADGKPSLKTHTVEWDRDALGKDVLAFREQLA HHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH NRDLEYRTAAAALYRKLLGPAAAELRGKSTIVVVPDGVLWNLPFQALVRPDGAHLLERQT CCCCHHHHHHHHHHHHHHCCHHHHHCCCEEEEEECCCEEECCCHHHHCCCCCHHHHHCCE VFYAPSLTFLRQDRRSGGPAGRELLAMGNPGAANLPNAAREVQTLAKLYDAGGALALTGA EEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC AATKDAWLRDAPNYRLLHLATHGVLNPANPMYSWLALAPGAKDASDDALEAREIVAMNLH CCCCCHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHEEECC ADLAVLSACDTGRGLVMAGEGLVGMSWAFLAAGTRTTVVSQWKVESASTTDMMLAFHRNL HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCHHEEEEEEECCCCCHHHHHHHHHHHH KQEMGRARSLQRAMVATMRTPERRHPYYWAGFVMIGNGY HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC >Mature Secondary Structure MLVAGITGLVGVMWLSAQIPLADRLLAAGTPQGVEEILNAAPGEVTHDVFTACRNAAQAT CEECCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LERGSPAALKQFQTALAVAERVNSPADVAAALLGVGISQSRQNQNIASLTTFDKGYPLAV HHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCHHEEECCCCCCEEE QAGDQALQAHYLRARGVAYSTLGRFAEGLAENARSLALYREIKDNRGASFVLSNTCAAHR ECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH VMGDLRRAAAECEEAYQLSKGLTDGVAAGVGLGNLGPVAAEQGNFAAAREYLEESIRLHQ HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH EKGDLRLLGTSLLNIGPVYKGLGEYEKAFAAYERAVALTAQVNDFSGRSMALFNRAALYT CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHH SLHRYDEALKDLREGLAQREKFDSKYQTGYGLVNISRLESYLGDTDGGCRDAEQALEIGR HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHH QYQSGHLTWAALNARGVCEMKRKNIAKAREMLEGAVAQIESVRGLAGGGDQTGQSFMTDK HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC IEPYHNLLRVQLELGQPEQAFATAERARARQLVDAVRRGKTQTVLSMTAEEQREEKRLGD CHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH ALARLDGRVAASSGAAKTEALAAWDKAKRDFEAFRAHLYAVHPELEARRGEAPPLTIAET HHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHCCCCCCCEEHHHH ADLLPDAGTVAIEFAVLNNSIRIFTVEHGADGKPSLKTHTVEWDRDALGKDVLAFREQLA HHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH NRDLEYRTAAAALYRKLLGPAAAELRGKSTIVVVPDGVLWNLPFQALVRPDGAHLLERQT CCCCHHHHHHHHHHHHHHCCHHHHHCCCEEEEEECCCEEECCCHHHHCCCCCHHHHHCCE VFYAPSLTFLRQDRRSGGPAGRELLAMGNPGAANLPNAAREVQTLAKLYDAGGALALTGA EEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC AATKDAWLRDAPNYRLLHLATHGVLNPANPMYSWLALAPGAKDASDDALEAREIVAMNLH CCCCCHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHEEECC ADLAVLSACDTGRGLVMAGEGLVGMSWAFLAAGTRTTVVSQWKVESASTTDMMLAFHRNL HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCHHEEEEEEECCCCCHHHHHHHHHHHH KQEMGRARSLQRAMVATMRTPERRHPYYWAGFVMIGNGY HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA