Definition Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession NC_008536
Length 9,965,640

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The map label for this gene is ybbO [C]

Identifier: 116619677

GI number: 116619677

Start: 651346

End: 652119

Strand: Direct

Name: ybbO [C]

Synonym: Acid_0540

Alternate gene names: 116619677

Gene position: 651346-652119 (Clockwise)

Preceding gene: 116619674

Following gene: 116619679

Centisome position: 6.54

GC content: 65.89

Gene sequence:

>774_bases
ATGCCAAGACGCGTAGCGATGGTGACCGGAGCGTCCAGTGGAATCGGTGCGGCGTTTGCCCGCCGGTTGTCGCGCGATGG
ATTCGCGCTGATCCTGGTAGCGCGACGGGCGGACCGGCTGGAATCGCTGGCGCGCGAACTCGGCGGCGCGGAGACGGTCG
CGGCCGATCTCACGCAGCATGAGGGACTGGCGCGCGTGGAGCAGCGAATCGCGTCCGCAGCGGACCTGGAGTTGCTCGTC
AACAATGCGGGCTTCGGCACCAAGGGGAAGTTTCACGAAACCTCGCTCGAAGGTCAGGACGCGATGCACCGCCTGCACGT
GATCGCGACCATGCGGTTGACGCGCGCGGCGCTGGCGGCGATGGTTCCGCGCGGTCGCGGCGGCGTGATTAACGTCTCTT
CGGTGGCGGCGTTCGGGCAGAGTCCCGGTAACGTCAGTTACTGCAGCACCAAAGCGTGGATGAACAGCTTCACGGAAGGA
CTCGACCTCGAATTGAGGAGCGCCGGCTCGCCGGTGCGGGTGCAGGCGCTCTGTCCAGGCTTCACGATTACCGAGTTCCA
CGATGCGATGGGGATGAGCCGCGACGGAATCCCCGCCTGGATGTGGATGCCGGCCGACGATGTGGTGGATACGTCCCTGC
GCGGCCTGGCTCGCGGCCAGGTATTCGTGGTGCCAGGCGCGTTCTACAAACTCATCGTCAATGTGGAGAAGATCGTGCCG
CGATGGGTCCGGTCGGCGGCGATCGTGGCGGCCGGTAGGAGAAGGCGGAAGTGA

Upstream 100 bases:

>100_bases
CATAATACGGCCGGAGCCAGCAGCAACACCCCCGGTAGCGCGAATCGTTTCAGGAATTCCATTGTCCCCCCGCTTTGCCA
GTTTACGCCAAACTGGAAGC

Downstream 100 bases:

>100_bases
GCACGGTCGGAAACGCCCGCGTGGAGTAAGGGAATAAAGCGCGCGGTAGCTGACGCGCAATTTGGAGGCGCTGACGGTCT
CCGCAAGAAGCCGCCTGAAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MPRRVAMVTGASSGIGAAFARRLSRDGFALILVARRADRLESLARELGGAETVAADLTQHEGLARVEQRIASAADLELLV
NNAGFGTKGKFHETSLEGQDAMHRLHVIATMRLTRAALAAMVPRGRGGVINVSSVAAFGQSPGNVSYCSTKAWMNSFTEG
LDLELRSAGSPVRVQALCPGFTITEFHDAMGMSRDGIPAWMWMPADDVVDTSLRGLARGQVFVVPGAFYKLIVNVEKIVP
RWVRSAAIVAAGRRRRK

Sequences:

>Translated_257_residues
MPRRVAMVTGASSGIGAAFARRLSRDGFALILVARRADRLESLARELGGAETVAADLTQHEGLARVEQRIASAADLELLV
NNAGFGTKGKFHETSLEGQDAMHRLHVIATMRLTRAALAAMVPRGRGGVINVSSVAAFGQSPGNVSYCSTKAWMNSFTEG
LDLELRSAGSPVRVQALCPGFTITEFHDAMGMSRDGIPAWMWMPADDVVDTSLRGLARGQVFVVPGAFYKLIVNVEKIVP
RWVRSAAIVAAGRRRRK
>Mature_256_residues
PRRVAMVTGASSGIGAAFARRLSRDGFALILVARRADRLESLARELGGAETVAADLTQHEGLARVEQRIASAADLELLVN
NAGFGTKGKFHETSLEGQDAMHRLHVIATMRLTRAALAAMVPRGRGGVINVSSVAAFGQSPGNVSYCSTKAWMNSFTEGL
DLELRSAGSPVRVQALCPGFTITEFHDAMGMSRDGIPAWMWMPADDVVDTSLRGLARGQVFVVPGAFYKLIVNVEKIVPR
WVRSAAIVAAGRRRRK

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=188, Percent_Identity=33.5106382978723, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=27.6041666666667, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI32483357, Length=201, Percent_Identity=30.8457711442786, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI109715829, Length=200, Percent_Identity=33, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=29.7520661157025, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI210032110, Length=252, Percent_Identity=24.2063492063492, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI226371731, Length=188, Percent_Identity=25.531914893617, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4557649, Length=182, Percent_Identity=26.9230769230769, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI33667109, Length=207, Percent_Identity=33.8164251207729, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031737, Length=192, Percent_Identity=33.8541666666667, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254992, Length=187, Percent_Identity=28.3422459893048, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40807363, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=25.9067357512953, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI142976729, Length=244, Percent_Identity=24.1803278688525, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI44680136, Length=216, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI44680133, Length=216, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI17738292, Length=216, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI210032112, Length=251, Percent_Identity=23.5059760956175, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI223718074, Length=179, Percent_Identity=30.1675977653631, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=29.6875, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1786701, Length=198, Percent_Identity=29.2929292929293, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787820, Length=198, Percent_Identity=32.3232323232323, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082100, Length=193, Percent_Identity=31.6062176165803, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=25.4098360655738, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367175, Length=203, Percent_Identity=32.0197044334975, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787335, Length=189, Percent_Identity=27.5132275132275, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790717, Length=200, Percent_Identity=27.5, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=191, Percent_Identity=29.3193717277487, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=209, Percent_Identity=33.9712918660287, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=210, Percent_Identity=32.3809523809524, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=33.8164251207729, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=204, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=206, Percent_Identity=29.6116504854369, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=223, Percent_Identity=31.390134529148, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=29.5774647887324, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=259, Percent_Identity=27.027027027027, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=208, Percent_Identity=29.3269230769231, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=238, Percent_Identity=29.8319327731092, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=212, Percent_Identity=31.1320754716981, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=30.3482587064677, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=29.4416243654822, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=208, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=28.780487804878, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=30.3482587064677, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=216, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=206, Percent_Identity=29.126213592233, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=192, Percent_Identity=27.0833333333333, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=29.3877551020408, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=276, Percent_Identity=24.6376811594203, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=38.659793814433, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28571526, Length=207, Percent_Identity=35.2657004830918, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24644339, Length=204, Percent_Identity=32.3529411764706, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21357041, Length=204, Percent_Identity=33.8235294117647, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI161076933, Length=203, Percent_Identity=31.0344827586207, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24584748, Length=203, Percent_Identity=31.0344827586207, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24584752, Length=236, Percent_Identity=27.1186440677966, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28574402, Length=193, Percent_Identity=30.0518134715026, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24584744, Length=193, Percent_Identity=30.0518134715026, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24640442, Length=190, Percent_Identity=30, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=31.8407960199005, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=27.1794871794872, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007236, Length=227, Percent_Identity=29.0748898678414, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24643142, Length=186, Percent_Identity=31.1827956989247, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24639444, Length=193, Percent_Identity=30.0518134715026, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28571387, Length=230, Percent_Identity=27.3913043478261, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641388, Length=223, Percent_Identity=30.4932735426009, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007234, Length=200, Percent_Identity=30.5, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24641232, Length=200, Percent_Identity=27.5, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27644; Mature: 27513

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPRRVAMVTGASSGIGAAFARRLSRDGFALILVARRADRLESLARELGGAETVAADLTQH
CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHH
EGLARVEQRIASAADLELLVNNAGFGTKGKFHETSLEGQDAMHRLHVIATMRLTRAALAA
CCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MVPRGRGGVINVSSVAAFGQSPGNVSYCSTKAWMNSFTEGLDLELRSAGSPVRVQALCPG
HCCCCCCCEEEHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCEEEECCCCCEEEEEECCC
FTITEFHDAMGMSRDGIPAWMWMPADDVVDTSLRGLARGQVFVVPGAFYKLIVNVEKIVP
CCHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHH
RWVRSAAIVAAGRRRRK
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PRRVAMVTGASSGIGAAFARRLSRDGFALILVARRADRLESLARELGGAETVAADLTQH
CCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHH
EGLARVEQRIASAADLELLVNNAGFGTKGKFHETSLEGQDAMHRLHVIATMRLTRAALAA
CCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MVPRGRGGVINVSSVAAFGQSPGNVSYCSTKAWMNSFTEGLDLELRSAGSPVRVQALCPG
HCCCCCCCEEEHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCEEEECCCCCEEEEEECCC
FTITEFHDAMGMSRDGIPAWMWMPADDVVDTSLRGLARGQVFVVPGAFYKLIVNVEKIVP
CCHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHH
RWVRSAAIVAAGRRRRK
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]