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The map label for this gene is ypsC [H]

Identifier: 116517216

GI number: 116517216

Start: 344622

End: 345779

Strand: Direct

Name: ypsC [H]

Synonym: SPD_0341

Alternate gene names: 116517216

Gene position: 344622-345779 (Clockwise)

Preceding gene: 116515799

Following gene: 116516323

Centisome position: 16.84

GC content: 44.04

Gene sequence:

>1158_bases
ATGAAAAAAGAATTTAATTTAATTGCAACTGTGGCAGCAGGGCTTGAGGCTGTCGTTGGTCGTGAAGTGCGAGAGTTGGG
CTACGATTGTCAGGTTGAAAATGGACGTGTTCGTTTTCAAGGAGACGTGAGAGCTATTATCGAAACCAACCTTTGGCTTC
GGGCAGCAGATCGTATCAAAATTATCGTAGGAACGTTCCCAGCTAAGACTTTTGAAGAGCTATTTCAGGGAGTTTTCGCT
TTAGATTGGGAAAATTATTTACCACTTGGAGCTCGGTTCCCGATTTCAAAAGCTAAATGTGTTAAGTCCAAACTTCACAA
TGAGCCCAGTGTTCAGGCTATTTCTAAGAAAGCTGTTGTCAAGAAATTGCAGAAACACTATGCTCGCCCAGAAGGGGTTC
CTCTGATGGAGAATGGCCCAGAGTTTAAGATTGAGGTCTCTATTCTCAAAGATGTGGCAACTGTCATGATTGATACGACC
GGGTCTAGCCTCTTTAAACGTGGTTATCGTACCGAAAAAGGTGGCGCTCCTATCAAGGAAAATATGGCAGCAGCCATTTT
ACAACTTTCTAACTGGTATCCAGACAAGCCTTTGATTGATCCGACCTGTGGTTCGGGGACTTTCTGTATTGAGGCAGTTA
TGATTGCTAGAAAGATGGCGCCAGGTCTTCGTCGCTCTTTTGCATTTGAGGAATGGAACTGGATCAGCGATCGCTTGATT
CAAGAAGTGCGCACAGAAGCGGCTAAAAAAGTAGAACGTGAGCTTGAGCTGGATATCATGGGCTGTGATATTGATGCTCG
CATGGTGGAAATTGCTAAGGCCAATGCTCAGGCAGCTGGTGTTGCAGGAGACATTACTTTTAAGCAGATGCGCGTGCAGG
ATTTACGTTCCGATAAAATCAATGGAGTAATCATTTCCAATCCGCCTTATGGTGAACGTTTGTCAGATGATGCAGGGGTG
ACCAAGCTCTATGCTGAGATGGGGCAAGTATTTGCACCGCTGAAAACTTGGAGCAAATTTATCCTGACTAGTGATGAAGC
TTTTGAAAGCAAGTATGGTAGCCAAGCAGATAAGAAGCGTAAGTTATACAACGGAACCTTGAAAGTGGATTTATATCAAT
ATTTTGGTCAGCGTGTCAAACGGCAAGAGGTAAAATAG

Upstream 100 bases:

>100_bases
AACATGGCTTATAGAAAATTGCATATAGGTTGGGGCTGAGAAATTTTCTCAACCTCATTTTTTAAAGTGGACATATAGAA
AGGTCTTGCAAGACTGTAAC

Downstream 100 bases:

>100_bases
AAAGGGATACTCATGAGTAAAAAAAGACGAAATCGTCATAAAAAAGAAGCTCAAGAACCGCAATTTGATTTTGATGAAGC
AAAAGAGCTAACAGTTGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKKEFNLIATVAAGLEAVVGREVRELGYDCQVENGRVRFQGDVRAIIETNLWLRAADRIKIIVGTFPAKTFEELFQGVFA
LDWENYLPLGARFPISKAKCVKSKLHNEPSVQAISKKAVVKKLQKHYARPEGVPLMENGPEFKIEVSILKDVATVMIDTT
GSSLFKRGYRTEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEEWNWISDRLI
QEVRTEAAKKVERELELDIMGCDIDARMVEIAKANAQAAGVAGDITFKQMRVQDLRSDKINGVIISNPPYGERLSDDAGV
TKLYAEMGQVFAPLKTWSKFILTSDEAFESKYGSQADKKRKLYNGTLKVDLYQYFGQRVKRQEVK

Sequences:

>Translated_385_residues
MKKEFNLIATVAAGLEAVVGREVRELGYDCQVENGRVRFQGDVRAIIETNLWLRAADRIKIIVGTFPAKTFEELFQGVFA
LDWENYLPLGARFPISKAKCVKSKLHNEPSVQAISKKAVVKKLQKHYARPEGVPLMENGPEFKIEVSILKDVATVMIDTT
GSSLFKRGYRTEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEEWNWISDRLI
QEVRTEAAKKVERELELDIMGCDIDARMVEIAKANAQAAGVAGDITFKQMRVQDLRSDKINGVIISNPPYGERLSDDAGV
TKLYAEMGQVFAPLKTWSKFILTSDEAFESKYGSQADKKRKLYNGTLKVDLYQYFGQRVKRQEVK
>Mature_385_residues
MKKEFNLIATVAAGLEAVVGREVRELGYDCQVENGRVRFQGDVRAIIETNLWLRAADRIKIIVGTFPAKTFEELFQGVFA
LDWENYLPLGARFPISKAKCVKSKLHNEPSVQAISKKAVVKKLQKHYARPEGVPLMENGPEFKIEVSILKDVATVMIDTT
GSSLFKRGYRTEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEEWNWISDRLI
QEVRTEAAKKVERELELDIMGCDIDARMVEIAKANAQAAGVAGDITFKQMRVQDLRSDKINGVIISNPPYGERLSDDAGV
TKLYAEMGQVFAPLKTWSKFILTSDEAFESKYGSQADKKRKLYNGTLKVDLYQYFGQRVKRQEVK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=347, Percent_Identity=33.4293948126801, Blast_Score=193, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43261; Mature: 43261

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEFNLIATVAAGLEAVVGREVRELGYDCQVENGRVRFQGDVRAIIETNLWLRAADRIK
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCEEEEEECCCEEEECCCEE
IIVGTFPAKTFEELFQGVFALDWENYLPLGARFPISKAKCVKSKLHNEPSVQAISKKAVV
EEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
KKLQKHYARPEGVPLMENGPEFKIEVSILKDVATVMIDTTGSSLFKRGYRTEKGGAPIKE
HHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHEEECCCHHHHHCCCCCCCCCCCHHH
NMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEEWNWISDRLI
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHH
QEVRTEAAKKVERELELDIMGCDIDARMVEIAKANAQAAGVAGDITFKQMRVQDLRSDKI
HHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
NGVIISNPPYGERLSDDAGVTKLYAEMGQVFAPLKTWSKFILTSDEAFESKYGSQADKKR
CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHH
KLYNGTLKVDLYQYFGQRVKRQEVK
HHHCCEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKEFNLIATVAAGLEAVVGREVRELGYDCQVENGRVRFQGDVRAIIETNLWLRAADRIK
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECCEEEEEECCCEEEECCCEE
IIVGTFPAKTFEELFQGVFALDWENYLPLGARFPISKAKCVKSKLHNEPSVQAISKKAVV
EEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
KKLQKHYARPEGVPLMENGPEFKIEVSILKDVATVMIDTTGSSLFKRGYRTEKGGAPIKE
HHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHEEECCCHHHHHCCCCCCCCCCCHHH
NMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEEWNWISDRLI
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHH
QEVRTEAAKKVERELELDIMGCDIDARMVEIAKANAQAAGVAGDITFKQMRVQDLRSDKI
HHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
NGVIISNPPYGERLSDDAGVTKLYAEMGQVFAPLKTWSKFILTSDEAFESKYGSQADKKR
CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHH
KLYNGTLKVDLYQYFGQRVKRQEVK
HHHCCEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]