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The map label for this gene is lacT [H]

Identifier: 116517211

GI number: 116517211

Start: 1078227

End: 1079063

Strand: Reverse

Name: lacT [H]

Synonym: SPD_1049

Alternate gene names: 116517211

Gene position: 1079063-1078227 (Counterclockwise)

Preceding gene: 116516368

Following gene: 116516599

Centisome position: 52.74

GC content: 35.72

Gene sequence:

>837_bases
ATGTATCGAATTCTAAATCCAATGAATCACAATGTCTCGCTTGTCAGAAATGATAAGGGAGAAGAGGTGATTATAATTGG
TAAGGGGATTGCATTCGGAAAAAGGAAGGGGGATTTGATTGCTGAAAATCAGGTTGAGAAAATCTTTCGGATGAAGACCG
AAGAGTCCAGAGAAAACTTTATGGCTCTTCTCAAAGATGTTCCGCTTGATTTTATCACAGTGACCTATGAAATCATTGAT
AAGCTATCAAAGAAATATCATTATCCGATTCAAGAGTATCTCTATGTAACCTTGACAGATCATATTTACTGTTCTTATCA
AGCTCTAACTCAAGGAAGGTACAAGGATAGTAATCTGCCGGATATTTCCGCTAAGTATCCTGTCGCTTTTCAAATCGCAA
ATGAAGCTTTTGAAATTTACCGTCAGAAGCTAGCAGATCATTTTCCTGAGGACGAGATTATTCGGATTGCTTATCATTTC
ATCAATGCCGAAGGTGAAAATGAAGTGGAACTTGTGGAGTCGATTGATAAGAGGAAAGAAATTCTCAGGAATGTTGAAGA
AGTGCTAAAGGGTTATGCAATTCAACGAACCAAAAAAAATAATCATTTCTATGATCGCTTTATGATTCATTTGAATTATT
TCTTGGATTATTTAGACAGATCTAGAGATGATAACCAATCACTTCTGGATATGGAAGATCATATTAAACAATCCTATCCA
AAAGCCTTCGAGATTGGTTCCAAGATCTATGATGTGATTACGCAACATACGGGTCTTGATTTGTATAAAAGTGAACGAGT
TTATCTAGTTCTACATATCCAACGTTTATTGTCATAA

Upstream 100 bases:

>100_bases
TAGGCATGATCACAGGTGAATTAGAAATCAGCTGATTTTCTAGTTCATTTGTGGTCATTTTTTGTACTCATATACCTTTA
AGATATAAAAGGAGGTTGAC

Downstream 100 bases:

>100_bases
AAATTTATTTAAAACTATATAAGGAGAATTCTATCATGAATAGAGAAGAAGTAACATTGTTAGGTTTTGAAATCGTAGCC
TATGCTGGCGATGCTCGTTC

Product: transcription antiterminator LacT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MYRILNPMNHNVSLVRNDKGEEVIIIGKGIAFGKRKGDLIAENQVEKIFRMKTEESRENFMALLKDVPLDFITVTYEIID
KLSKKYHYPIQEYLYVTLTDHIYCSYQALTQGRYKDSNLPDISAKYPVAFQIANEAFEIYRQKLADHFPEDEIIRIAYHF
INAEGENEVELVESIDKRKEILRNVEEVLKGYAIQRTKKNNHFYDRFMIHLNYFLDYLDRSRDDNQSLLDMEDHIKQSYP
KAFEIGSKIYDVITQHTGLDLYKSERVYLVLHIQRLLS

Sequences:

>Translated_278_residues
MYRILNPMNHNVSLVRNDKGEEVIIIGKGIAFGKRKGDLIAENQVEKIFRMKTEESRENFMALLKDVPLDFITVTYEIID
KLSKKYHYPIQEYLYVTLTDHIYCSYQALTQGRYKDSNLPDISAKYPVAFQIANEAFEIYRQKLADHFPEDEIIRIAYHF
INAEGENEVELVESIDKRKEILRNVEEVLKGYAIQRTKKNNHFYDRFMIHLNYFLDYLDRSRDDNQSLLDMEDHIKQSYP
KAFEIGSKIYDVITQHTGLDLYKSERVYLVLHIQRLLS
>Mature_278_residues
MYRILNPMNHNVSLVRNDKGEEVIIIGKGIAFGKRKGDLIAENQVEKIFRMKTEESRENFMALLKDVPLDFITVTYEIID
KLSKKYHYPIQEYLYVTLTDHIYCSYQALTQGRYKDSNLPDISAKYPVAFQIANEAFEIYRQKLADHFPEDEIIRIAYHF
INAEGENEVELVESIDKRKEILRNVEEVLKGYAIQRTKKNNHFYDRFMIHLNYFLDYLDRSRDDNQSLLDMEDHIKQSYP
KAFEIGSKIYDVITQHTGLDLYKSERVYLVLHIQRLLS

Specific function: Mediates positive regulation of the lac operon by functioning as an antiterminator factor of transcription [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=275, Percent_Identity=25.8181818181818, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32964; Mature: 32964

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRILNPMNHNVSLVRNDKGEEVIIIGKGIAFGKRKGDLIAENQVEKIFRMKTEESRENF
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MALLKDVPLDFITVTYEIIDKLSKKYHYPIQEYLYVTLTDHIYCSYQALTQGRYKDSNLP
HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCEEEHHHHHHCCCCCCCCCC
DISAKYPVAFQIANEAFEIYRQKLADHFPEDEIIRIAYHFINAEGENEVELVESIDKRKE
CCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ILRNVEEVLKGYAIQRTKKNNHFYDRFMIHLNYFLDYLDRSRDDNQSLLDMEDHIKQSYP
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
KAFEIGSKIYDVITQHTGLDLYKSERVYLVLHIQRLLS
HHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEHHHHHC
>Mature Secondary Structure
MYRILNPMNHNVSLVRNDKGEEVIIIGKGIAFGKRKGDLIAENQVEKIFRMKTEESRENF
CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MALLKDVPLDFITVTYEIIDKLSKKYHYPIQEYLYVTLTDHIYCSYQALTQGRYKDSNLP
HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCEEEHHHHHHCCCCCCCCCC
DISAKYPVAFQIANEAFEIYRQKLADHFPEDEIIRIAYHFINAEGENEVELVESIDKRKE
CCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ILRNVEEVLKGYAIQRTKKNNHFYDRFMIHLNYFLDYLDRSRDDNQSLLDMEDHIKQSYP
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
KAFEIGSKIYDVITQHTGLDLYKSERVYLVLHIQRLLS
HHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045813; 9066115; 2125053 [H]