Click here to switch to the map view.

The map label for this gene is glnR [H]

Identifier: 116517159

GI number: 116517159

Start: 455648

End: 456004

Strand: Direct

Name: glnR [H]

Synonym: SPD_0447

Alternate gene names: 116517159

Gene position: 455648-456004 (Clockwise)

Preceding gene: 116515489

Following gene: 116516090

Centisome position: 22.27

GC content: 42.3

Gene sequence:

>357_bases
ATGAAGGAAAAAGAATTTCGCCGAAATATGGCTGTTTTTCCTATCGGCAGTGTTATGAAGTTGACCGATCTATCGGCGCG
TCAGATTCGTTATTATGAAGATCAAGAGTTGATCAAGCCCGATCGAAACGAAGGAAATCGTCGCATGTATTCCTTGAATG
ACATGGATCGTCTGCTTGAAATCAAAGATTATATCTCTGAAGGTTATAATATCGCTGCCATTAAGAAAAAATATGCTGAA
CGTGAAGCGAAATCCAAGAAAGCGGTTAGTCAGACTGAAGTACGTCGTGCACTTCACAATGAACTCCTCCAACAGGGGCG
TTTTGCTTCAGTACAGTCACCTTTTGGTCGCGGTTAG

Upstream 100 bases:

>100_bases
TTTTTAGAGAAAAAAGAAAAATAATGTTACATTTTATAACATTATCAATTGACGTTTGTCTTTTTTTAGACTATAATAGA
CAGAAAGAAGGAAATTGTAA

Downstream 100 bases:

>100_bases
GCAACCGCAAGTAGTCATAGATTAAGGAGAAAACTTATGCCAATCACAGCTGCAGATATTCGTCGTGAAGTCAAGGAAAA
AAATGTTACCTTTATTCGTC

Product: transcriptional regulator, MerR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKEKEFRRNMAVFPIGSVMKLTDLSARQIRYYEDQELIKPDRNEGNRRMYSLNDMDRLLEIKDYISEGYNIAAIKKKYAE
REAKSKKAVSQTEVRRALHNELLQQGRFASVQSPFGRG

Sequences:

>Translated_118_residues
MKEKEFRRNMAVFPIGSVMKLTDLSARQIRYYEDQELIKPDRNEGNRRMYSLNDMDRLLEIKDYISEGYNIAAIKKKYAE
REAKSKKAVSQTEVRRALHNELLQQGRFASVQSPFGRG
>Mature_118_residues
MKEKEFRRNMAVFPIGSVMKLTDLSARQIRYYEDQELIKPDRNEGNRRMYSLNDMDRLLEIKDYISEGYNIAAIKKKYAE
REAKSKKAVSQTEVRRALHNELLQQGRFASVQSPFGRG

Specific function: Represses many genes including the glnRA operon and tnrA during growth with nitrogen excess [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 13862; Mature: 13862

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKEFRRNMAVFPIGSVMKLTDLSARQIRYYEDQELIKPDRNEGNRRMYSLNDMDRLLE
CCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHCCCHHHCCCCCCCCCCEEECHHHHHHHHH
IKDYISEGYNIAAIKKKYAEREAKSKKAVSQTEVRRALHNELLQQGRFASVQSPFGRG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKEKEFRRNMAVFPIGSVMKLTDLSARQIRYYEDQELIKPDRNEGNRRMYSLNDMDRLLE
CCCHHHHCCCCCCCCCCHHHHHCCCHHHHHHCCCHHHCCCCCCCCCCEEECHHHHHHHHH
IKDYISEGYNIAAIKKKYAEREAKSKKAVSQTEVRRALHNELLQQGRFASVQSPFGRG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2906311; 2573733; 1677938; 9384377 [H]