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The map label for this gene is yqxC [H]

Identifier: 116516842

GI number: 116516842

Start: 1089630

End: 1090445

Strand: Reverse

Name: yqxC [H]

Synonym: SPD_1064

Alternate gene names: 116516842

Gene position: 1090445-1089630 (Counterclockwise)

Preceding gene: 116516004

Following gene: 116515743

Centisome position: 53.29

GC content: 44.61

Gene sequence:

>816_bases
ATGGCTAAGGAAAGAGTGGATGTACTAGCTTATAAACAGGGGTTGTTTGAAACGAGAGAGCAGGCCAAGCGAGGTGTGAT
GGCTGGTCTAGTCGTAGCAGTCCTTAATGGAGAACGGTTTGACAAGCCAGGAGAGAAAATTCCAGATGACACCGAATTAA
AACTCAAGGGGGAGAAACTCAAGTATGTCAGCCGTGGTGGTTTGAAACTGGAAAAGGCCTTGCAGGTCTTTGATTTGTCG
GTGGATGGCGCGACTACGATTGATATCGGGGCCTCTACTGGAGGTTTTACCGATGTCATGCTACAGAATAGTGCCAAGTT
GGTCTTTGCAGTCGATGTTGGTACCAATCAGTTGGCTTGGAAATTACGCCAAGACCCACGAGTTGTCAGCATGGAGCAGT
TCAATTTTCGCTATGCTGAAAAGACTGATTTCGAGCAGGAGCCGAGCTTTGCCAGTATTGATGTGAGTTTCATTTCCCTT
AGTCTGATTTTGCCAGCCTTGCACCGTGTCTTGGCTGATCAAGGTCAGGTGGTAGCACTTGTCAAACCTCAGTTTGAGGC
AGGACGTGAGCAGATTGGGAAAAATGGAATTATTCGAGATGCTAAGATTCATCAGAATGTCCTTGAATCTGTAACAGCTA
TGGCAGTAGAGGCAGGTTTTTCAGTCCTTGACTTGGACTTTTCTCCCATCCAAGGTGGACATGGAAATATTGAATTTTTA
GCGTATTTGAAAAAAGAAAAGTCAGCAAGCAATCAGATTCTTGCTGAGATTAAAGAAGCAGTAGAGAGGGCGCATAGTCA
ATTTAAAAATGAATAA

Upstream 100 bases:

>100_bases
CAAACCCTGGATCAAGCTAATGAAAAATTGGAAGAAATTGCCCAGCAGGTTCCCTTTGAAACAGAATCGATTGTAAGTGT
AGTAGAAAGTTTGAGAATCA

Downstream 100 bases:

>100_bases
AAAAGAGAGACTTGAAAAAATTAGAAGATTGGTGACAGATTATCAAATCGGCACGCAAGAAGAAATTGTAGAACATTTGA
AAGAAGCAGGTATCACTGCC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MAKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKLKYVSRGGLKLEKALQVFDLS
VDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAWKLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISL
SLILPALHRVLADQGQVVALVKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLDLDFSPIQGGHGNIEFL
AYLKKEKSASNQILAEIKEAVERAHSQFKNE

Sequences:

>Translated_271_residues
MAKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKLKYVSRGGLKLEKALQVFDLS
VDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAWKLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISL
SLILPALHRVLADQGQVVALVKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLDLDFSPIQGGHGNIEFL
AYLKKEKSASNQILAEIKEAVERAHSQFKNE
>Mature_270_residues
AKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKLKYVSRGGLKLEKALQVFDLSV
DGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAWKLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISLS
LILPALHRVLADQGQVVALVKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLDLDFSPIQGGHGNIEFLA
YLKKEKSASNQILAEIKEAVERAHSQFKNE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29870; Mature: 29738

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCE
KYVSRGGLKLEKALQVFDLSVDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAW
EEHHCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCCEEECCCCEEEEEEECCCCCEEE
KLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISLSLILPALHRVLADQGQVVAL
EECCCCCEEEHHHCCEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE
VKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLDLDFSPIQGGHGNIEFL
ECCCHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHE
AYLKKEKSASNQILAEIKEAVERAHSQFKNE
EEEHHHCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKERVDVLAYKQGLFETREQAKRGVMAGLVVAVLNGERFDKPGEKIPDDTELKLKGEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCE
KYVSRGGLKLEKALQVFDLSVDGATTIDIGASTGGFTDVMLQNSAKLVFAVDVGTNQLAW
EEHHCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCCEEECCCCEEEEEEECCCCCEEE
KLRQDPRVVSMEQFNFRYAEKTDFEQEPSFASIDVSFISLSLILPALHRVLADQGQVVAL
EECCCCCEEEHHHCCEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEE
VKPQFEAGREQIGKNGIIRDAKIHQNVLESVTAMAVEAGFSVLDLDFSPIQGGHGNIEFL
ECCCHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHE
AYLKKEKSASNQILAEIKEAVERAHSQFKNE
EEEHHHCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]