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The map label for this gene is ycgR [H]

Identifier: 116516828

GI number: 116516828

Start: 814564

End: 815469

Strand: Reverse

Name: ycgR [H]

Synonym: SPD_0798

Alternate gene names: 116516828

Gene position: 815469-814564 (Counterclockwise)

Preceding gene: 116515502

Following gene: 116516749

Centisome position: 39.85

GC content: 41.94

Gene sequence:

>906_bases
ATGACTGCTTTTCAACAACTCCCATCTAGTGTACTTCAAACTGGAGCCATTTTTCTCTCCATTATCATTGAAGCCCTTCC
CTTCGTTCTGATAGGAGGCATTGTCTCAGGGCTGATTGAAGTTTATATCACACCTGACAAGGTTTATCATTTTCTCCCTC
GAAATCGTTGGGGGAGAATCTTTTTTGGGACCTTTGTCGGTATACTTTTCCCTTCTTGTGAATGTGGAATCGTCCCCATC
ATCAATCGTTTTCTGGAAAAAAAGGTTCCAAGTTACACGGCCGTTCCTTTTCTTGTGACAGCACCTGTTATCAATCCCAT
TGTTCTTTTTGCGACCTATTCTGCCTTTGGCAACTCCTTCCATGTCGCCCTATTACGAGCTCTGGGTTCCATTCTTGTGG
CTGTAATACTAGGAATTTTTCTAGGATTTTTCTGGCAAGAACCGATTCAGAAAGAAAATCGTCTGGCTTGTCATGAGCAT
GATTTTTCTTACTTGAGTTCTGCAAAAAAAGTTTTTCAAGTCTTTGTGCAGGCCATTGATGAATTTTTTGATACGGGGCG
TTATTTGGTATTTGGCTGCCTCTTTGCTTCTATAATACAGGTCTACGTTCCGACTCGGATTCTGACCTCTATCAGTGCGA
CTCCTCTTTTTGCTATCCTGCTCTTGATGCTTTTAGCCTTTCTTCTTTCGCTCTGTAGTGAGGCGGATGCCTTTATAGGT
GCTTCTCTACTCTCGAGTTTCGGTTTGGCACCAGTTCTGGCCTTTCTCGTCATTGGCCCAATGCTGGATATCAAAAATAT
TCTCATGATGAAAAATTACTTGAAAGCACGATTTATTAGTCACTTCATTACGATTGTGACTCTGGTCGTTTTAGCCTATT
CTCTCTTGATTGGAGTCATCCTATGA

Upstream 100 bases:

>100_bases
GGACAAGATGTTTGAAGAGTTTGCTAAACTCCCTGATTTGAAACAAGTTACTTTCCCTGATGACAAAGAGAAAAAAGTCA
AAGCAGAAAAGAAAAACTAG

Downstream 100 bases:

>100_bases
TTCGATTTTTAGTTTTAGCTGGCTATTTTGAACTGACTATTTACCTCCATCTGTCGGGCAAACTAAACCAGTACATCAAC
ATGCACTATTCCTATCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTAFQQLPSSVLQTGAIFLSIIIEALPFVLIGGIVSGLIEVYITPDKVYHFLPRNRWGRIFFGTFVGILFPSCECGIVPI
INRFLEKKVPSYTAVPFLVTAPVINPIVLFATYSAFGNSFHVALLRALGSILVAVILGIFLGFFWQEPIQKENRLACHEH
DFSYLSSAKKVFQVFVQAIDEFFDTGRYLVFGCLFASIIQVYVPTRILTSISATPLFAILLLMLLAFLLSLCSEADAFIG
ASLLSSFGLAPVLAFLVIGPMLDIKNILMMKNYLKARFISHFITIVTLVVLAYSLLIGVIL

Sequences:

>Translated_301_residues
MTAFQQLPSSVLQTGAIFLSIIIEALPFVLIGGIVSGLIEVYITPDKVYHFLPRNRWGRIFFGTFVGILFPSCECGIVPI
INRFLEKKVPSYTAVPFLVTAPVINPIVLFATYSAFGNSFHVALLRALGSILVAVILGIFLGFFWQEPIQKENRLACHEH
DFSYLSSAKKVFQVFVQAIDEFFDTGRYLVFGCLFASIIQVYVPTRILTSISATPLFAILLLMLLAFLLSLCSEADAFIG
ASLLSSFGLAPVLAFLVIGPMLDIKNILMMKNYLKARFISHFITIVTLVVLAYSLLIGVIL
>Mature_300_residues
TAFQQLPSSVLQTGAIFLSIIIEALPFVLIGGIVSGLIEVYITPDKVYHFLPRNRWGRIFFGTFVGILFPSCECGIVPII
NRFLEKKVPSYTAVPFLVTAPVINPIVLFATYSAFGNSFHVALLRALGSILVAVILGIFLGFFWQEPIQKENRLACHEHD
FSYLSSAKKVFQVFVQAIDEFFDTGRYLVFGCLFASIIQVYVPTRILTSISATPLFAILLLMLLAFLLSLCSEADAFIGA
SLLSSFGLAPVLAFLVIGPMLDIKNILMMKNYLKARFISHFITIVTLVVLAYSLLIGVIL

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 33290; Mature: 33159

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFQQLPSSVLQTGAIFLSIIIEALPFVLIGGIVSGLIEVYITPDKVYHFLPRNRWGRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHH
FFGTFVGILFPSCECGIVPIINRFLEKKVPSYTAVPFLVTAPVINPIVLFATYSAFGNSF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
HVALLRALGSILVAVILGIFLGFFWQEPIQKENRLACHEHDFSYLSSAKKVFQVFVQAID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EFFDTGRYLVFGCLFASIIQVYVPTRILTSISATPLFAILLLMLLAFLLSLCSEADAFIG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLLSSFGLAPVLAFLVIGPMLDIKNILMMKNYLKARFISHFITIVTLVVLAYSLLIGVI
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
L
C
>Mature Secondary Structure 
TAFQQLPSSVLQTGAIFLSIIIEALPFVLIGGIVSGLIEVYITPDKVYHFLPRNRWGRI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHH
FFGTFVGILFPSCECGIVPIINRFLEKKVPSYTAVPFLVTAPVINPIVLFATYSAFGNSF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
HVALLRALGSILVAVILGIFLGFFWQEPIQKENRLACHEHDFSYLSSAKKVFQVFVQAID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EFFDTGRYLVFGCLFASIIQVYVPTRILTSISATPLFAILLLMLLAFLLSLCSEADAFIG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLLSSFGLAPVLAFLVIGPMLDIKNILMMKNYLKARFISHFITIVTLVVLAYSLLIGVI
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]