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The map label for this gene is lplC [H]

Identifier: 116516742

GI number: 116516742

Start: 88750

End: 89673

Strand: Direct

Name: lplC [H]

Synonym: SPD_0089

Alternate gene names: 116516742

Gene position: 88750-89673 (Clockwise)

Preceding gene: 116515415

Following gene: 116516928

Centisome position: 4.34

GC content: 42.21

Gene sequence:

>924_bases
ATGGCAAAAAAGAAAATTAAAAAAGAAAAAATTGATAATGTCGGCATTCACTCCTTCAGTAAGAAAGCAGATATCTTCTT
CAGTATCATTTCGGGTTTGATTGCCCTCTCTTGTATCCTACCTTTTGTATTCGTTATCATTATTTCAGTGACAGACGAGA
AAAGCCTCCTCCAATACGGCTATAGCTTCTTCCCATCCCAATTTGGCTTAGACGGTTTTGAGTTTTTGGCACAGTTTAAG
GATAAAATCCTACAAGCCCTCTTCATCTCTGTCTTTGTAACTGTAGTTGGGACATTGACAAATGTCTTTATCACAACAAC
CTATGCCTACGCTATTTCACGGACAACCTTTAAGTATCGCAGATTCTTTACCATCTTCGTTCTGCTCAGTATGTTGTTCA
ACGCTGGTTTGGTACCAGGTTATATCATGGTGACCCGTGTACTTCAGCTTGGTGACACTGTTTGGGCCTTGATTGTTCCA
ATGCTTCTCTCACCATTCAATATCATCTTGATGCGTTCCTTCTTCAAGAAGACCATTCCAGAAGCCATTCTCGAATCGGC
TCGTATCGATGGTGCCAGTGAGGCCCGGATTTTCTTCCAAATCTGTTTGCCATTGTCACTACCAGGTATCGCAACCATCA
CGCTTTTGACAGCTCTTGGTTTCTGGAATGACTGGTTCAACGCCCTTCTTTACATCAAGAGTGACAACTTGTATCCATTG
CAATATTTGCTCATGCAAATCCAACAAAATATGGACTACATTGCCAAAGCGGTCGGCTTGACTGGTCAACTGGGAGTTGC
TCTACCGAAAGAAACAGGTCGTATGGCCATGGTTGTGGTTGCAACCCTTCCAATCGCGATTTTGTATCCATTCTTCCAAC
GCTACTTTGTAAAAGGTTTGACTATCGGTGGTGTGAAAGAATAG

Upstream 100 bases:

>100_bases
CTTTACCAATCCGTTGTTGGTTTGATTCTGGTTATCCTATCAAACTTGCTTGCAAGACGAGTCGATCCAAACTCAGCTTT
GTTCTAGAAAGGAGGAGAAT

Downstream 100 bases:

>100_bases
TGCTTATTGAGAAATAACATTTCTCAGTTCCCAACTTCCCTTGTGTGAAGTTAATACTCTTCGAAAATCAAATTCAAACC
GCGTCAACGTCGCCTTGCCG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MAKKKIKKEKIDNVGIHSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFK
DKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVP
MLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPL
QYLLMQIQQNMDYIAKAVGLTGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVKE

Sequences:

>Translated_307_residues
MAKKKIKKEKIDNVGIHSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFK
DKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVP
MLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPL
QYLLMQIQQNMDYIAKAVGLTGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVKE
>Mature_306_residues
AKKKIKKEKIDNVGIHSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKD
KILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVPM
LLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQ
YLLMQIQQNMDYIAKAVGLTGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVKE

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=285, Percent_Identity=27.719298245614, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789860, Length=207, Percent_Identity=28.5024154589372, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34534; Mature: 34403

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKIKKEKIDNVGIHSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYG
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
YSFFPSQFGLDGFEFLAQFKDKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYR
HHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIP
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPL
HHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHH
QYLLMQIQQNMDYIAKAVGLTGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
TIGGVKE
CCCCCCC
>Mature Secondary Structure 
AKKKIKKEKIDNVGIHSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYG
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH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CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]