Click here to switch to the map view.

The map label for this gene is yecD [C]

Identifier: 116516727

GI number: 116516727

Start: 1577053

End: 1577553

Strand: Reverse

Name: yecD [C]

Synonym: SPD_1555

Alternate gene names: 116516727

Gene position: 1577553-1577053 (Counterclockwise)

Preceding gene: 116515369

Following gene: 116515553

Centisome position: 77.1

GC content: 35.33

Gene sequence:

>501_bases
ATGAAGACGGCTTTTATAATCATTGATGTTCAGAATGTTTTAGTAGAAACTGGGTTCCAGACAAAAAGTCTATTGGGAAA
AATTTCTTATTTACAAAACCAGGCTAGAAGCAAGAATATTGAAATTATCTATGTTCAACATATTGAGAACTCTGAAGCTC
AAACATCAGAAGATTGGCAGTTATCTGCGCTTTTAAATCGAAAACCTGCTGAAAAGGTCTTTCAGAAGAAGTATAACAGT
ATTTTCAAAGAAACTGGCTTAAAAGAATACTTGGATAAGCAGGGGATTGAAAAATTAGTTTTATGTGGTATGCAGACAGA
ATATTGTGTGGATACCTCTGTCAAGGTTGCCTTTGAATATGGCTATCAGCTTATTGTTCCAGAAGGTGCTGTCACAACCT
TTGATGGGGATGACATTCCAGCAGAAACGATTAATGAATTTTATGAGGACATTTGGGAGGAGCGCTTTGCAGATGTTCTA
GATTACAAACATATTTTCTAA

Upstream 100 bases:

>100_bases
AGCTCGTACCGTGGAGTATCTAGCTCATCAGGGATTCCCCATCTATCCCCAAACCCTTGAAACCTATAACGCCTTTGTGC
ACTATTTGAAAGAGAACTAA

Downstream 100 bases:

>100_bases
AAAGAGGATTAAATGAACGAAAAAGAATTACTAGAACTAGTCGTGAAAGCGGCTGATGAGAAACGTGCGGAGGATATCCT
CGCACTTGATGTACAAGATT

Product: isochorismatase family protein

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase; Amidase; Nicotinamidase-Like Amidase; Isochorismatase/Nicotamidase Family Hydrolase; Hydrolase Isochorismatase Family; Acetyltransferase GNAT Family; Amidohydrolase; Amidase Nicotinamidase Family; 2 3-Dihydro-2 3-Dihydroxybenzoate Synthetase; Acetyltransferase; Isochorismatase Family Hydrolase; Pyrimidine Utilization Protein B

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKTAFIIIDVQNVLVETGFQTKSLLGKISYLQNQARSKNIEIIYVQHIENSEAQTSEDWQLSALLNRKPAEKVFQKKYNS
IFKETGLKEYLDKQGIEKLVLCGMQTEYCVDTSVKVAFEYGYQLIVPEGAVTTFDGDDIPAETINEFYEDIWEERFADVL
DYKHIF

Sequences:

>Translated_166_residues
MKTAFIIIDVQNVLVETGFQTKSLLGKISYLQNQARSKNIEIIYVQHIENSEAQTSEDWQLSALLNRKPAEKVFQKKYNS
IFKETGLKEYLDKQGIEKLVLCGMQTEYCVDTSVKVAFEYGYQLIVPEGAVTTFDGDDIPAETINEFYEDIWEERFADVL
DYKHIF
>Mature_166_residues
MKTAFIIIDVQNVLVETGFQTKSLLGKISYLQNQARSKNIEIIYVQHIENSEAQTSEDWQLSALLNRKPAEKVFQKKYNS
IFKETGLKEYLDKQGIEKLVLCGMQTEYCVDTSVKVAFEYGYQLIVPEGAVTTFDGDDIPAETINEFYEDIWEERFADVL
DYKHIF

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19197; Mature: 19197

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAFIIIDVQNVLVETGFQTKSLLGKISYLQNQARSKNIEIIYVQHIENSEAQTSEDWQ
CCEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHH
LSALLNRKPAEKVFQKKYNSIFKETGLKEYLDKQGIEKLVLCGMQTEYCVDTSVKVAFEY
HHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHEEEEEC
GYQLIVPEGAVTTFDGDDIPAETINEFYEDIWEERFADVLDYKHIF
CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTAFIIIDVQNVLVETGFQTKSLLGKISYLQNQARSKNIEIIYVQHIENSEAQTSEDWQ
CCEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHH
LSALLNRKPAEKVFQKKYNSIFKETGLKEYLDKQGIEKLVLCGMQTEYCVDTSVKVAFEY
HHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHEEEEEC
GYQLIVPEGAVTTFDGDDIPAETINEFYEDIWEERFADVLDYKHIF
CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA