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The map label for this gene is ybbK [C]

Identifier: 116516677

GI number: 116516677

Start: 1956806

End: 1957705

Strand: Reverse

Name: ybbK [C]

Synonym: SPD_1984

Alternate gene names: 116516677

Gene position: 1957705-1956806 (Counterclockwise)

Preceding gene: 116515561

Following gene: 116516901

Centisome position: 95.68

GC content: 42.44

Gene sequence:

>900_bases
ATGGCAATATTTTTCATGATTTTTCTGATTGTTTGTGTGCTCCTATTGGTGATAGTCACACTGAGTACAGTTTATGTGGT
TCGTCAGCAGTCGGTGGCGATTATTGAACGCTTTGGGAAATACCAAAAGGTTGCTAATAGCGGTATTCATATTCGCTTGC
CTTTTGGGATTGACTCGATTGCAGCACGGATTCAGTTGCGCTTGTTGCAAAGTGATATTGTGGTTGAGACTAAGACCAAG
GACAATGTGTTCGTTATGATGAATGTAGCGACTCAGTACCGTGTCAACGAGCAGAGCGTGACAGATGCTTACTATAAACT
CATACGTCCAGAATCTCAGATTAAATCTTATATCGAAGATGCTCTTCGCTCTTCTGTTCCAAAATTAACCTTGGATGAAT
TGTTTGAGAAAAAAGATGAGATTGCCCTTGAGGTTCAACACCAAGTAGCAGAAGAAATGACCACTTACGGCTACATTATC
GTGAAAACCTTGATTACCAAGGTCGAACCAGATGCAGAAGTTAAGCAATCTATGAATGAAATCAATGCGGCGCAACGTAA
GCGGGTCGCAGCACAAGAATTGGCGGAAGCTGACAAGATTAAAATTGTCACTGCAGCTGAAGCCGAAGCAGAAAAAGACC
GCCTTCATGGTGTGGGGATTGCCCAACAACGTAAGGCGATTGTGGATGGATTGGCAGAGTCTATCACCGAACTCAAGGAA
GCCAATGTTGGCATGACAGAAGAACAAATCATGTCTATCCTCTTGACCAACCAGTATTTGGATACCTTGAATACCTTTGC
CTCTAAAGGAAATCAAACCATCTTTTTACCAAATACTCCAAATGGTGTGGATGATATCCGTACACAAATCTTGTCAGCCC
TTCGCGCTGAGAAGAAATAA

Upstream 100 bases:

>100_bases
ACCTCTAATTATTGACATTTCAGGAAAAATCGCAGTAAAAACGGCACAGCCTTCTTTAAATGTGCTATAATACTAGAAAA
ATACTTGTGGAGGTTCCATT

Downstream 100 bases:

>100_bases
TAGACTAATACTCTTCGAAAATCTCTTCAAACTACGTCAGCGTCGTCTTGCCGTATAGATGTTACTGACTTCGTCAGTTC
TATCTGCAACCTCAAAACAG

Product: hypersensitive-induced reaction protein 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MAIFFMIFLIVCVLLLVIVTLSTVYVVRQQSVAIIERFGKYQKVANSGIHIRLPFGIDSIAARIQLRLLQSDIVVETKTK
DNVFVMMNVATQYRVNEQSVTDAYYKLIRPESQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQHQVAEEMTTYGYII
VKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRLHGVGIAQQRKAIVDGLAESITELKE
ANVGMTEEQIMSILLTNQYLDTLNTFASKGNQTIFLPNTPNGVDDIRTQILSALRAEKK

Sequences:

>Translated_299_residues
MAIFFMIFLIVCVLLLVIVTLSTVYVVRQQSVAIIERFGKYQKVANSGIHIRLPFGIDSIAARIQLRLLQSDIVVETKTK
DNVFVMMNVATQYRVNEQSVTDAYYKLIRPESQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQHQVAEEMTTYGYII
VKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRLHGVGIAQQRKAIVDGLAESITELKE
ANVGMTEEQIMSILLTNQYLDTLNTFASKGNQTIFLPNTPNGVDDIRTQILSALRAEKK
>Mature_298_residues
AIFFMIFLIVCVLLLVIVTLSTVYVVRQQSVAIIERFGKYQKVANSGIHIRLPFGIDSIAARIQLRLLQSDIVVETKTKD
NVFVMMNVATQYRVNEQSVTDAYYKLIRPESQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQHQVAEEMTTYGYIIV
KTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRLHGVGIAQQRKAIVDGLAESITELKEA
NVGMTEEQIMSILLTNQYLDTLNTFASKGNQTIFLPNTPNGVDDIRTQILSALRAEKK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Escherichia coli, GI1786697, Length=280, Percent_Identity=23.9285714285714, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI45550506, Length=285, Percent_Identity=23.1578947368421, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 33594; Mature: 33463

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIFFMIFLIVCVLLLVIVTLSTVYVVRQQSVAIIERFGKYQKVANSGIHIRLPFGIDSI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
AARIQLRLLQSDIVVETKTKDNVFVMMNVATQYRVNEQSVTDAYYKLIRPESQIKSYIED
HHHHHHHHHHHCCEEEEECCCCEEEEEEEHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHH
ALRSSVPKLTLDELFEKKDEIALEVQHQVAEEMTTYGYIIVKTLITKVEPDAEVKQSMNE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
INAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRLHGVGIAQQRKAIVDGLAESITELKE
HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ANVGMTEEQIMSILLTNQYLDTLNTFASKGNQTIFLPNTPNGVDDIRTQILSALRAEKK
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIFFMIFLIVCVLLLVIVTLSTVYVVRQQSVAIIERFGKYQKVANSGIHIRLPFGIDSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
AARIQLRLLQSDIVVETKTKDNVFVMMNVATQYRVNEQSVTDAYYKLIRPESQIKSYIED
HHHHHHHHHHHCCEEEEECCCCEEEEEEEHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHH
ALRSSVPKLTLDELFEKKDEIALEVQHQVAEEMTTYGYIIVKTLITKVEPDAEVKQSMNE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
INAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRLHGVGIAQQRKAIVDGLAESITELKE
HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ANVGMTEEQIMSILLTNQYLDTLNTFASKGNQTIFLPNTPNGVDDIRTQILSALRAEKK
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]