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The map label for this gene is xylS [H]

Identifier: 116516613

GI number: 116516613

Start: 282052

End: 284265

Strand: Direct

Name: xylS [H]

Synonym: SPD_0285

Alternate gene names: 116516613

Gene position: 282052-284265 (Clockwise)

Preceding gene: 116515742

Following gene: 116515977

Centisome position: 13.78

GC content: 35.82

Gene sequence:

>2214_bases
TTGAAAATTTTTAAGGGAGAGTTTTATCGAATCTCTGTATTAACAGACAAGCTAGTAAGGTTAGAATACTCTCAAACTGG
AAGTTTTGAGGATAGAACGACACAACTTATCTATAATAGAGATTTTGGCCAAATTTCGTTAGATTATATCGAGACATCAA
ACGTACTAGATATTATGACGGACTATTTTCATCTGCACTTTAATAAAGGAGAATTTAACGCCGAAAATTTATTTATAGAA
TTAAAAGGAAATTTTGCCGTATATGGTAGTCGCTGGTATTTTGGTGAATCTATTGAAACGTTAAAAGGAACAGCTCGGAC
TCTGGATAAGGCAGATGGAGCAATCTCGTTAGAAGATGGAATTATTAGCCGAAATGGTATAGCCTTATTGGATGATTCTC
AAGGATTTATTTGGGATGAACAATCTGGTTATATTGAGAGAGAAAATCAAATTGACCTGTATTTCTTTGCCTATGGGCAT
GATTATAGAGGAGCAATCAGAGACTTTTACCATTTGACTGGTTCAACACCCTTGTTGCCAAGATATGCTTTAGGCAATTG
GTGGAGTAGATATTGGCCTTATACGTCGGATGAATACTTGGATTTAATAGACAGATTTGAAACAGAGAAAATTCCATTAT
CTATCGGTGTGTTAGATATGGATTGGCATATAACTGACATTCCAGCTCGTTTTGGAAGTGGCTGGACAGGATATAGTTGG
AATAGAAACTTAATACCAAATCCAGAACAGTTATTGCAACAACTTCATGATAGAAAGTTAAAACTCTCCTTAAATGTCCA
TCCTGCTGATGGGATACGGGCTTATGAAGAAGCTTATCCTCAAATCGCAAAACGATTGGGGTTAAATGTAGAACTAGAAG
AACCTGCTATTTTTGATTTTTTTAATCCCTCTTTTAGGGAAGCCTACTTTAAAGATGTTCATTATGAGCTAGAAAAGCAG
GGAGTAGATTTTTGGTGGATTGACTGGCAACAGGGGACACAAGGCATGCTAGATCCACTTTGGCTTTTAAACCATTATCA
CTATCAGGATAGTTGTAAAAATGCAGAAGGTGGTTTGATTTTATCAAGATATGCAGGTCCTGGTAGTCACCGCTACCCTG
TTGGTTTTTCAGGGGATACTATTATTAGTTGGAATTCCTTAAGATTTCAACCCTATTTTACAGCGACAGCATCTAATATC
GGTTATAGTTGGTGGAGTCATGATATCGGTGGACATATGTTGGGGGATTATGACGAAGAGCTACAAACTAGATGGCTACA
GTTTGGTGTTTTTAGTCCGATTACTCGATTACATAGTTCTAGAAGTCCTTTTAATAGTAAAGAACCTTGGTTTTTTTCAG
AAACAACATCTAAGATTATGAAGAAATACCTTCGTTTGAGACATCAGATGATTCCTTATCTATATACCATGAATGTAAAG
ACACATGAGGAAGGTGCCCCATTAATCAGTCCAATCTATTATTTCTATCCAGAGAATGATGAGAGCTATAATGTTCCAAA
CCAATACTTTTTTGGAACAGAACTGATGGTGGCTCCCATTGTAGAAAAGATGGATTTGACATTCCAATCTGCAAAAGTAG
ATGTATGGTTCCCTGAAGGTGAATGGTATGACTTCTTTTCAGAGAAAAAATACACAGGTGGTGTGAAGTTAAGTGTTTAT
AGGGACATCTCGACTACGCCTGTGTTTGCAAAAAGTGGTGCAATCATTCCCTTGGTTGGTTCTGAGATAGGTATGGGTGT
TGATTTACCTGAGGTTGTAGATTGGTATGTATTCCCAGGGAAACAACATTCTTTTGAAATGCTTGAAGATCAAAATGGTC
AAAGATATAAAACAAGATTATCAATCGATTGGGAAATGGGAATGGTAGAGTTAGCATTACAAGGAGATTCTAGTATCGTT
CCAAGCAATAGAAAACATAGAATTCATTTTAAAGGAACGAATGTGTCTATAATTGAATTGCCAAATAAGAATGATACAGC
TAAATTTGAATGGAAAGATAATAAAAGGACATCTTTAAATGACGAAGTTTTTAGACTACTAAAGACAGCTTCTCTTCCAT
ATGAATTAAAAGATAGATTGTTAAATCAATTCATCAATGCCAAAAACTCTCATGACTTAATGAATATCTTGCATCATCAG
GATAAGGAATTGAGAGGGCGTTTGTTGGAAATGATATTTACTAGCCAAAACTAA

Upstream 100 bases:

>100_bases
TCATAGATATAACAGATAGAACATTGCATTCAGAATAATGAAAAACGCATCAAAAATGGTGCGTTCTGTTTTTATGCTAC
CATAAAAGGAGGAAAACAAA

Downstream 100 bases:

>100_bases
TTGAAATAATTAGAAAGTCATTTGTTTAGTGTATATGAAGATTCTGTATGGTATTCGTTATCACTGGTCACATTGAAAAT
GTGAAATAAGCACCTACAAC

Product: glycosyl hydrolase, family protein 31

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 737; Mature: 737

Protein sequence:

>737_residues
MKIFKGEFYRISVLTDKLVRLEYSQTGSFEDRTTQLIYNRDFGQISLDYIETSNVLDIMTDYFHLHFNKGEFNAENLFIE
LKGNFAVYGSRWYFGESIETLKGTARTLDKADGAISLEDGIISRNGIALLDDSQGFIWDEQSGYIERENQIDLYFFAYGH
DYRGAIRDFYHLTGSTPLLPRYALGNWWSRYWPYTSDEYLDLIDRFETEKIPLSIGVLDMDWHITDIPARFGSGWTGYSW
NRNLIPNPEQLLQQLHDRKLKLSLNVHPADGIRAYEEAYPQIAKRLGLNVELEEPAIFDFFNPSFREAYFKDVHYELEKQ
GVDFWWIDWQQGTQGMLDPLWLLNHYHYQDSCKNAEGGLILSRYAGPGSHRYPVGFSGDTIISWNSLRFQPYFTATASNI
GYSWWSHDIGGHMLGDYDEELQTRWLQFGVFSPITRLHSSRSPFNSKEPWFFSETTSKIMKKYLRLRHQMIPYLYTMNVK
THEEGAPLISPIYYFYPENDESYNVPNQYFFGTELMVAPIVEKMDLTFQSAKVDVWFPEGEWYDFFSEKKYTGGVKLSVY
RDISTTPVFAKSGAIIPLVGSEIGMGVDLPEVVDWYVFPGKQHSFEMLEDQNGQRYKTRLSIDWEMGMVELALQGDSSIV
PSNRKHRIHFKGTNVSIIELPNKNDTAKFEWKDNKRTSLNDEVFRLLKTASLPYELKDRLLNQFINAKNSHDLMNILHHQ
DKELRGRLLEMIFTSQN

Sequences:

>Translated_737_residues
MKIFKGEFYRISVLTDKLVRLEYSQTGSFEDRTTQLIYNRDFGQISLDYIETSNVLDIMTDYFHLHFNKGEFNAENLFIE
LKGNFAVYGSRWYFGESIETLKGTARTLDKADGAISLEDGIISRNGIALLDDSQGFIWDEQSGYIERENQIDLYFFAYGH
DYRGAIRDFYHLTGSTPLLPRYALGNWWSRYWPYTSDEYLDLIDRFETEKIPLSIGVLDMDWHITDIPARFGSGWTGYSW
NRNLIPNPEQLLQQLHDRKLKLSLNVHPADGIRAYEEAYPQIAKRLGLNVELEEPAIFDFFNPSFREAYFKDVHYELEKQ
GVDFWWIDWQQGTQGMLDPLWLLNHYHYQDSCKNAEGGLILSRYAGPGSHRYPVGFSGDTIISWNSLRFQPYFTATASNI
GYSWWSHDIGGHMLGDYDEELQTRWLQFGVFSPITRLHSSRSPFNSKEPWFFSETTSKIMKKYLRLRHQMIPYLYTMNVK
THEEGAPLISPIYYFYPENDESYNVPNQYFFGTELMVAPIVEKMDLTFQSAKVDVWFPEGEWYDFFSEKKYTGGVKLSVY
RDISTTPVFAKSGAIIPLVGSEIGMGVDLPEVVDWYVFPGKQHSFEMLEDQNGQRYKTRLSIDWEMGMVELALQGDSSIV
PSNRKHRIHFKGTNVSIIELPNKNDTAKFEWKDNKRTSLNDEVFRLLKTASLPYELKDRLLNQFINAKNSHDLMNILHHQ
DKELRGRLLEMIFTSQN
>Mature_737_residues
MKIFKGEFYRISVLTDKLVRLEYSQTGSFEDRTTQLIYNRDFGQISLDYIETSNVLDIMTDYFHLHFNKGEFNAENLFIE
LKGNFAVYGSRWYFGESIETLKGTARTLDKADGAISLEDGIISRNGIALLDDSQGFIWDEQSGYIERENQIDLYFFAYGH
DYRGAIRDFYHLTGSTPLLPRYALGNWWSRYWPYTSDEYLDLIDRFETEKIPLSIGVLDMDWHITDIPARFGSGWTGYSW
NRNLIPNPEQLLQQLHDRKLKLSLNVHPADGIRAYEEAYPQIAKRLGLNVELEEPAIFDFFNPSFREAYFKDVHYELEKQ
GVDFWWIDWQQGTQGMLDPLWLLNHYHYQDSCKNAEGGLILSRYAGPGSHRYPVGFSGDTIISWNSLRFQPYFTATASNI
GYSWWSHDIGGHMLGDYDEELQTRWLQFGVFSPITRLHSSRSPFNSKEPWFFSETTSKIMKKYLRLRHQMIPYLYTMNVK
THEEGAPLISPIYYFYPENDESYNVPNQYFFGTELMVAPIVEKMDLTFQSAKVDVWFPEGEWYDFFSEKKYTGGVKLSVY
RDISTTPVFAKSGAIIPLVGSEIGMGVDLPEVVDWYVFPGKQHSFEMLEDQNGQRYKTRLSIDWEMGMVELALQGDSSIV
PSNRKHRIHFKGTNVSIIELPNKNDTAKFEWKDNKRTSLNDEVFRLLKTASLPYELKDRLLNQFINAKNSHDLMNILHHQ
DKELRGRLLEMIFTSQN

Specific function: Catalyzes the liberation of alpha-xylose from the non- reducing terminal glucose of xyloglucan oligosaccharides. Has high hydrolytic activity on the disaccharide isoprimeverose. Follows a retaining mechanism of substrate hydrolysis [H]

COG id: COG1501

COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 31 family [H]

Homologues:

Organism=Homo sapiens, GI66346737, Length=492, Percent_Identity=25.4065040650407, Blast_Score=157, Evalue=5e-38,
Organism=Homo sapiens, GI38202257, Length=487, Percent_Identity=24.8459958932238, Blast_Score=142, Evalue=2e-33,
Organism=Homo sapiens, GI88900491, Length=487, Percent_Identity=24.8459958932238, Blast_Score=141, Evalue=2e-33,
Organism=Homo sapiens, GI119393895, Length=504, Percent_Identity=23.4126984126984, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI119393893, Length=504, Percent_Identity=23.4126984126984, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI119393891, Length=504, Percent_Identity=23.4126984126984, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI310115361, Length=336, Percent_Identity=23.8095238095238, Blast_Score=97, Evalue=7e-20,
Organism=Homo sapiens, GI221316699, Length=336, Percent_Identity=23.8095238095238, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI157364974, Length=502, Percent_Identity=23.3067729083665, Blast_Score=89, Evalue=2e-17,
Organism=Escherichia coli, GI2367256, Length=461, Percent_Identity=22.7765726681128, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI2367323, Length=242, Percent_Identity=22.7272727272727, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560798, Length=486, Percent_Identity=25.1028806584362, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17560800, Length=486, Percent_Identity=25.1028806584362, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71991189, Length=557, Percent_Identity=23.1597845601436, Blast_Score=125, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71985706, Length=225, Percent_Identity=30.2222222222222, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI32563849, Length=226, Percent_Identity=26.1061946902655, Blast_Score=91, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6319706, Length=366, Percent_Identity=24.8633879781421, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24643749, Length=484, Percent_Identity=24.7933884297521, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24643753, Length=484, Percent_Identity=24.7933884297521, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24643751, Length=484, Percent_Identity=24.7933884297521, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24643746, Length=484, Percent_Identity=24.7933884297521, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI21357605, Length=484, Percent_Identity=24.7933884297521, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24650054, Length=368, Percent_Identity=23.6413043478261, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011013
- InterPro:   IPR000322
- InterPro:   IPR017853 [H]

Pfam domain/function: PF01055 Glyco_hydro_31 [H]

EC number: NA

Molecular weight: Translated: 86097; Mature: 86097

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFKGEFYRISVLTDKLVRLEYSQTGSFEDRTTQLIYNRDFGQISLDYIETSNVLDIMT
CCCCCCCEEEEEEEECEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHC
DYFHLHFNKGEFNAENLFIELKGNFAVYGSRWYFGESIETLKGTARTLDKADGAISLEDG
CEEEEEECCCCCCCCEEEEEEECCEEEEECEEEECCCHHHHHHHHHHHHHCCCEEEECCC
IISRNGIALLDDSQGFIWDEQSGYIERENQIDLYFFAYGHDYRGAIRDFYHLTGSTPLLP
EECCCCEEEEECCCCCEEECCCCCEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCC
RYALGNWWSRYWPYTSDEYLDLIDRFETEKIPLSIGVLDMDWHITDIPARFGSGWTGYSW
CHHHHCHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEEEECCHHHCCCCCCCCC
NRNLIPNPEQLLQQLHDRKLKLSLNVHPADGIRAYEEAYPQIAKRLGLNVELEEPAIFDF
CCCCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEC
FNPSFREAYFKDVHYELEKQGVDFWWIDWQQGTQGMLDPLWLLNHYHYQDSCKNAEGGLI
CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCCCCEE
LSRYAGPGSHRYPVGFSGDTIISWNSLRFQPYFTATASNIGYSWWSHDIGGHMLGDYDEE
EEECCCCCCCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCCHHCCCCCCCCCCCCHHH
LQTRWLQFGVFSPITRLHSSRSPFNSKEPWFFSETTSKIMKKYLRLRHQMIPYLYTMNVK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCEEEEEEEE
THEEGAPLISPIYYFYPENDESYNVPNQYFFGTELMVAPIVEKMDLTFQSAKVDVWFPEG
ECCCCCCEECEEEEEECCCCCCCCCCCCEEECCHHHHHHHHHHHCCEEEEEEEEEECCCC
EWYDFFSEKKYTGGVKLSVYRDISTTPVFAKSGAIIPLVGSEIGMGVDLPEVVDWYVFPG
CCHHHHCCCCCCCCEEEEEEECCCCCCEEECCCCEEEEECCCCCCCCCCHHHHEEEEECC
KQHSFEMLEDQNGQRYKTRLSIDWEMGMVELALQGDSSIVPSNRKHRIHFKGTNVSIIEL
CCCCHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEC
PNKNDTAKFEWKDNKRTSLNDEVFRLLKTASLPYELKDRLLNQFINAKNSHDLMNILHHQ
CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCC
DKELRGRLLEMIFTSQN
CHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIFKGEFYRISVLTDKLVRLEYSQTGSFEDRTTQLIYNRDFGQISLDYIETSNVLDIMT
CCCCCCCEEEEEEEECEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHC
DYFHLHFNKGEFNAENLFIELKGNFAVYGSRWYFGESIETLKGTARTLDKADGAISLEDG
CEEEEEECCCCCCCCEEEEEEECCEEEEECEEEECCCHHHHHHHHHHHHHCCCEEEECCC
IISRNGIALLDDSQGFIWDEQSGYIERENQIDLYFFAYGHDYRGAIRDFYHLTGSTPLLP
EECCCCEEEEECCCCCEEECCCCCEECCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCC
RYALGNWWSRYWPYTSDEYLDLIDRFETEKIPLSIGVLDMDWHITDIPARFGSGWTGYSW
CHHHHCHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEEEECCHHHCCCCCCCCC
NRNLIPNPEQLLQQLHDRKLKLSLNVHPADGIRAYEEAYPQIAKRLGLNVELEEPAIFDF
CCCCCCCHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEC
FNPSFREAYFKDVHYELEKQGVDFWWIDWQQGTQGMLDPLWLLNHYHYQDSCKNAEGGLI
CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCCCCEE
LSRYAGPGSHRYPVGFSGDTIISWNSLRFQPYFTATASNIGYSWWSHDIGGHMLGDYDEE
EEECCCCCCCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCCHHCCCCCCCCCCCCHHH
LQTRWLQFGVFSPITRLHSSRSPFNSKEPWFFSETTSKIMKKYLRLRHQMIPYLYTMNVK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCEEEEEEEE
THEEGAPLISPIYYFYPENDESYNVPNQYFFGTELMVAPIVEKMDLTFQSAKVDVWFPEG
ECCCCCCEECEEEEEECCCCCCCCCCCCEEECCHHHHHHHHHHHCCEEEEEEEEEECCCC
EWYDFFSEKKYTGGVKLSVYRDISTTPVFAKSGAIIPLVGSEIGMGVDLPEVVDWYVFPG
CCHHHHCCCCCCCCEEEEEEECCCCCCEEECCCCEEEEECCCCCCCCCCHHHHEEEEECC
KQHSFEMLEDQNGQRYKTRLSIDWEMGMVELALQGDSSIVPSNRKHRIHFKGTNVSIIEL
CCCCHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEC
PNKNDTAKFEWKDNKRTSLNDEVFRLLKTASLPYELKDRLLNQFINAKNSHDLMNILHHQ
CCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCC
DKELRGRLLEMIFTSQN
CHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10801892; 11427726 [H]