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The map label for this gene is cbf1 [H]

Identifier: 116516594

GI number: 116516594

Start: 1773455

End: 1774408

Strand: Reverse

Name: cbf1 [H]

Synonym: SPD_1777

Alternate gene names: 116516594

Gene position: 1774408-1773455 (Counterclockwise)

Preceding gene: 116516808

Following gene: 116515481

Centisome position: 86.72

GC content: 44.76

Gene sequence:

>954_bases
ATGAGGAAGAATATGAAGATTAGTCACATGAAAAAAGATGAGCTATTTGAAGGCTTTTACCTAATCAAATCAGCTGACCT
GAGGCAAACTCGAGCTGGGAAAAACTACCTAGCCTTTACCTTCCAAGATGATAGTGGCGAGATTGATGGGAAGCTCTGGG
ATGCCCAACCTCATAACATTGAGGCCTTTACCGCAGGTAAGGTTGTCCACATGAAAGGACGCCGAGAAGTTTATAACAAT
ACCCCTCAAGTCAATCAAATTACTCTCCGCCTGCCTCAAGCTGGTGAACCCAATGACCCAGCTGATTTCAAGGTCAAGTC
ACCAGTTGATGTCAAGGAAATTCGTGACTACATGTCGCAAATGATTTTCAAAATTGAAAATCCTGTCTGGCAACGGATTG
TCCGAAATCTCTACACCAAGTATGATAAGGAATTCTACTCCTATCCAGCTGCCAAGACCAACCACCATGCCTTTGAAACG
GGCTTGGCCTATCATACGGCGACCATGGTGCGTTTGGCAGACGCTATTAGCGAAGTTTATCCTCAGCTCAATAAGAGCCT
GCTCTATGCGGGGATTATGTTGCACGACTTGGCTAAGGTCATCGAGTTGACGGGACCAGACCAGACCGAGTACACGGTCA
GAGGCAATCTTCTTGGACATATCGCTCTGATTGATAGCGAAATTACCAAGACAGTTATGGAACTCGGCATCGATGATACC
AAGGAAGAAGTCGTTTTGCTTCGTCATGTCATCCTCAGTCACCACGGCTTGCTTGAATATGGAAGTCCAGTCCGTCCACG
TATTATGGAGGCAGAGATTATCCATATGATTGACAATCTGGATGCAAGCATGATGATGATGTCAACAGCTCTGGCTTTGG
TGGATAAAGGAGAGATGTCCAATAAAATCTTCGCTATGGATAATCGTTCCTTCTATAAACCAGATTTAGATTAA

Upstream 100 bases:

>100_bases
GAATTATTAAACCGTCGTACCATAGCTATCGAGCGGACGCTCCGTCACATTGAGTTGTCAGAAGGCGAGCCTGCGCTTGA
TCTACTCCATTTTCAAGAAA

Downstream 100 bases:

>100_bases
TAATTTAAGAAAAATGAGCATTTTTTAGGATAAGAATGTTCGTTTTTTTATGTAAATATGGTATAATAAGTAAAAGACAA
AAATGAATACTCTTCGAAAA

Product: cmp-binding-factor 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRKNMKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFTAGKVVHMKGRREVYNN
TPQVNQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFET
GLAYHTATMVRLADAISEVYPQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDT
KEEVVLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMSNKIFAMDNRSFYKPDLD

Sequences:

>Translated_317_residues
MRKNMKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFTAGKVVHMKGRREVYNN
TPQVNQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFET
GLAYHTATMVRLADAISEVYPQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDT
KEEVVLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMSNKIFAMDNRSFYKPDLD
>Mature_317_residues
MRKNMKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFTAGKVVHMKGRREVYNN
TPQVNQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFET
GLAYHTATMVRLADAISEVYPQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDT
KEEVVLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMSNKIFAMDNRSFYKPDLD

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 36302; Mature: 36302

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKNMKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNI
CCCCCCHHCCCHHHHHHCEEEEECCCHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCCE
EAFTAGKVVHMKGRREVYNNTPQVNQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQ
EEEECCCEEEECCCHHHHCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHH
MIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFETGLAYHTATMVRLADAISEVY
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEHHHHHHHHHHHHCCCCC
KEEVVLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMS
HHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
NKIFAMDNRSFYKPDLD
CEEEEECCCCCCCCCCC
>Mature Secondary Structure
MRKNMKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNI
CCCCCCHHCCCHHHHHHCEEEEECCCHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCCE
EAFTAGKVVHMKGRREVYNNTPQVNQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQ
EEEECCCEEEECCCHHHHCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHH
MIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFETGLAYHTATMVRLADAISEVY
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEHHHHHHHHHHHHCCCCC
KEEVVLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMS
HHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
NKIFAMDNRSFYKPDLD
CEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA