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The map label for this gene is yodJ [H]

Identifier: 116516570

GI number: 116516570

Start: 561254

End: 561970

Strand: Direct

Name: yodJ [H]

Synonym: SPD_0549

Alternate gene names: 116516570

Gene position: 561254-561970 (Clockwise)

Preceding gene: 116515557

Following gene: 116515716

Centisome position: 27.43

GC content: 42.54

Gene sequence:

>717_bases
ATGAAGAAAAGATACCTAGTCTTGACAGCTTTGCTAGCCTTGAGTCTAGCAGCTTGTTCACAAGAAAAAACAAAAAATGA
AGATGGAGAAACTAAGACAGAACAGACAGCCAAAGCTGATGGAACAGTCGGTAGTAAGTCTCAAGGAGCTGCCCAGAAGA
AAGCAGAAGTGGTCAATAAAGGTGATTACTACAGCATTCAAGGGAAATACGATGAAATCATCGTAGCCAACAAACACTAT
CCATTGTCTAAAGACTATAATCCAGGGGAAAATCCAACAGCCAAGGCAGAGTTGGTCAAACTCATCAAAGCCATGCAAGA
GGCAGGTTTCCCCATTAGCGATCATTACAGTGGTTTTAGAAGTTATGAAACTCAGACCAAACTCTATCAAGATTATGTTA
ATCAAGATGGGAAAGAAGCTGCCGACCGTTATTCTGCTCGACCTGGTTATAGCGAACACCAGACAGGCTTGGCCTTTGAT
GTGATTGGGACTGATGGTGATTTGGTAACAGAAGAAAAAGCAGCCCAATGGCTTTTGGACCATGCAGCTGATTATGGCTT
TGTTGTCCGTTATCTCAAAGGTAAGGAAAAAGAAACAGGCTATATGGCTGAGGAATGGCACCTGCGTTATGTCGGAAAAG
AAGCAAAAGAAATTGCTGAGAGTGGTCTCAGTTTGGAAGAATACTATGGCTTTGAAGGCGGAGACTACGTCGATTAA

Upstream 100 bases:

>100_bases
TGACAGCAGAAACCTGCCAAGCAAAACCGGATGAGATTAAAAGATTAGTCAAACGTTTATCGTCAGAAGTAGATAAACTA
TTAGAAATAAAGGAGTAGAA

Downstream 100 bases:

>100_bases
TACTCTTCGAAAATCTCTTCAAACCACGTCAGCGTCGCCTTACCTACTGACTACGTCGGTTCTATTCACAACCTCAAAAC
AGTGTTTTGAGCTGACTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKKRYLVLTALLALSLAACSQEKTKNEDGETKTEQTAKADGTVGSKSQGAAQKKAEVVNKGDYYSIQGKYDEIIVANKHY
PLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFD
VIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD

Sequences:

>Translated_238_residues
MKKRYLVLTALLALSLAACSQEKTKNEDGETKTEQTAKADGTVGSKSQGAAQKKAEVVNKGDYYSIQGKYDEIIVANKHY
PLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFD
VIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD
>Mature_238_residues
MKKRYLVLTALLALSLAACSQEKTKNEDGETKTEQTAKADGTVGSKSQGAAQKKAEVVNKGDYYSIQGKYDEIIVANKHY
PLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFD
VIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 26539; Mature: 26539

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRYLVLTALLALSLAACSQEKTKNEDGETKTEQTAKADGTVGSKSQGAAQKKAEVVNK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
GDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFR
CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDVIGTDGDLVTEEKAAQWLLD
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
HAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD
HHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKRYLVLTALLALSLAACSQEKTKNEDGETKTEQTAKADGTVGSKSQGAAQKKAEVVNK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
GDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIKAMQEAGFPISDHYSGFR
CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQTGLAFDVIGTDGDLVTEEKAAQWLLD
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
HAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD
HHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]