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The map label for this gene is licB [H]

Identifier: 116516542

GI number: 116516542

Start: 1155070

End: 1155948

Strand: Reverse

Name: licB [H]

Synonym: SPD_1124

Alternate gene names: 116516542

Gene position: 1155948-1155070 (Counterclockwise)

Preceding gene: 116515546

Following gene: 116515684

Centisome position: 56.49

GC content: 39.82

Gene sequence:

>879_bases
ATGAAAAGTAAAAACGGAGTTCCTTTTGGCCTTCTCTCAGGTATTTTCTGGGGCTTGGGTCTAACGGTTAGTGCTTATAT
CTTTTCGATTTTTACAGATTTGTCACCCTTTGTGGTGGCTGCAACTCATGATTTTTTGAGCATCTTTATCTTACTAGCTT
TTCTCTTGGTAAAAGAAGGGAAAGTTCGCCTCTCAATTTTCTTAAATATTCGCAATGTCAGTGTTATCATCGGAGCATTG
CTAGCAGGCCCTATCGGTATGCAGGCCAATCTTTATGCAGTTAAGTATATCGGAAGTTCTTTAGCTTCATCTGTATCGGC
TATTTACCCTGCGATTTCAGTTCTATTGGCTTTCTTCTTTTTGAAGCACAAGATTTCGAAAAATACTGTATTTGGGATTG
TCTTGATTATTGGAGGTATTATTGCCCAGACCTATAAAGTTGAACAGGTTAATTCCTTCTACATTGGGATTCTCTGTGCT
TTGGTTTGTGCTATTGCATGGGGAAGTGAGAGTGTTCTTAGCTCCTTTGCTATGGAAAGTGAACTGAGTGAAATCGAAGC
CCTCTTAATCCGTCAAGTGACTTCGTTCTTGTCCTATCTTGTGATTGTGCTCTTCTCTCATCAGTCATTTACTGCAGTAG
CCAATGGACAATTGCTAGGTCTCATGATTGTTTTTGCAGCCTTTGATATGATTTCCTACTTGGCTTATTATATCGCTATC
AATCGCTTGCAACCAGCCAAGGCTACAGGCTTGAACGTGAGCTATGTAGTATGGACGGTCTTGTTTGCAGTTGTTTTCTT
GGGTGCACCGCTAGATATGCTGACAATTATGACGTCACTTGTCGTCATTGCTGGAGTTTATATTATTATTAAAGAATAA

Upstream 100 bases:

>100_bases
TGGACTGTCTATAAGGAAGAGCAAGGTGAAGATTTTGGTGACTATGGTGTGAATCGTTACCAAAGAGCTGTTAAAGGTTT
GGCTTCTTATGGAGGTTCAG

Downstream 100 bases:

>100_bases
AGGAGATTCGTGTGAAAGCCATCATCTTAGCAGCGGGATTGGGAACTCGCTTGCGTCCTATGACTGAAAATACCCCTAAA
GCCTTGGTTCAGGTTAATCA

Product: protein LicB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEGKVRLSIFLNIRNVSVIIGAL
LAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFFLKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCA
LVCAIAWGSESVLSSFAMESELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE

Sequences:

>Translated_292_residues
MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEGKVRLSIFLNIRNVSVIIGAL
LAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFFLKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCA
LVCAIAWGSESVLSSFAMESELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
>Mature_292_residues
MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEGKVRLSIFLNIRNVSVIIGAL
LAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFFLKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCA
LVCAIAWGSESVLSSFAMESELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31630; Mature: 31630

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
KVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFF
CEEEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMES
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
HCCCCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEC
>Mature Secondary Structure
MKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
KVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFF
CEEEEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMES
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELSEIEALLIRQVTSFLSYLVIVLFSHQSFTAVANGQLLGLMIVFAAFDMISYLAYYIAI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLQPAKATGLNVSYVVWTVLFAVVFLGAPLDMLTIMTSLVVIAGVYIIIKE
HCCCCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800 [H]