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The map label for this gene is xseB

Identifier: 116516524

GI number: 116516524

Start: 1091310

End: 1091522

Strand: Reverse

Name: xseB

Synonym: SPD_1066

Alternate gene names: 116516524

Gene position: 1091522-1091310 (Counterclockwise)

Preceding gene: 116515460

Following gene: 116516004

Centisome position: 53.35

GC content: 40.85

Gene sequence:

>213_bases
ATGTCAAAACAAAAGAAATTTGAGGAAAATCTAGCAGAACTGGAAACCATTGTCCAAAGTTTGGAAAATGGTGAAATTGC
TCTGGAAGATGCGATTACTGCCTTTCAAAAGGGCATGGTCTTGTCAAAAGAGCTCCAAGCTACGCTGGACAAGGCTGAAA
AGACCTTGGTCAAGGTCATGCAAGAAGACGGAACAGAAAGTGATTTTGAATGA

Upstream 100 bases:

>100_bases
AAAAAAGAAGAGTCCGTTGTAGATTCGGTTGAGAGTTTGAAGAAAAAAGACCAAGTAACGCTTTTGATGCGAGATGGTCA
AGTAGAATTAGAGGTTAAAG

Downstream 100 bases:

>100_bases
AAAAGCAAGAAAAATTAGCTCTTGTCGAGTCGGCTTTGGAAGATTTTTATGGAGACCAGCAGTTTGCCTCTAGTTTACGG
GAGTCTGTTCTCTATTCTAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSKQKKFEENLAELETIVQSLENGEIALEDAITAFQKGMVLSKELQATLDKAEKTLVKVMQEDGTESDFE

Sequences:

>Translated_70_residues
MSKQKKFEENLAELETIVQSLENGEIALEDAITAFQKGMVLSKELQATLDKAEKTLVKVMQEDGTESDFE
>Mature_69_residues
SKQKKFEENLAELETIVQSLENGEIALEDAITAFQKGMVLSKELQATLDKAEKTLVKVMQEDGTESDFE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_STRP2 (Q04KB1)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816537.1
- ProteinModelPortal:   Q04KB1
- SMR:   Q04KB1
- STRING:   Q04KB1
- EnsemblBacteria:   EBSTRT00000019333
- GeneID:   4443075
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_1066
- eggNOG:   COG1722
- GeneTree:   EBGT00050000026924
- HOGENOM:   HBG728416
- OMA:   GMKISET
- ProtClustDB:   PRK00977
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 7850; Mature: 7719

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQKKFEENLAELETIVQSLENGEIALEDAITAFQKGMVLSKELQATLDKAEKTLVKVM
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEDGTESDFE
HHCCCCCCCC
>Mature Secondary Structure 
SKQKKFEENLAELETIVQSLENGEIALEDAITAFQKGMVLSKELQATLDKAEKTLVKVM
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEDGTESDFE
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA