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The map label for this gene is peb1A [H]

Identifier: 116516520

GI number: 116516520

Start: 540991

End: 541785

Strand: Reverse

Name: peb1A [H]

Synonym: SPD_0530

Alternate gene names: 116516520

Gene position: 541785-540991 (Counterclockwise)

Preceding gene: 116517131

Following gene: 116515469

Centisome position: 26.48

GC content: 43.02

Gene sequence:

>795_bases
ATGAAAAAAAAATTCTTTTTATCAGCATTATTGATTAGCCTTTTCGGCCTTGCTGCTGCCAAACCAGTCCAGGCTGATAC
TAGTATCGCAGACATTCAAAAAAGAGGCGAACTGGTTGTCGGTGTCAAACAAGACGTTCCCAATTTTGGTTACAAAGATC
CCAAGACCGGTACTTATTCTGGTATCGAAACCGACTTGGCCAAGATGGTAGCTGATGAACTCAAGGTCAAGATTCGCTAT
GTGCCGGTTACAGCACAAACCCGCGGCCCCCTTCTAGACAATGAACAGGTCGATATGGATATCGCGACCTTTACCATCAC
GGACGAACGCAAAAAACTCTACAACTTTACCAGTCCCTACTACACAGACGCTTCTGGATTTTTGGTCAATAAATCTGCCA
AAATCAAAAAGATTGAGGACCTAAACGGCAAAACCATCGGAGTCGCCCAAGGTTCTATCACCCAACGCCTGATTACTGAA
CTGGGTAAAAAGAAAGGTCTGAAGTTTAAATTCGTCGAACTTGGTTCCTACCCAGAATTGATTACTTCCCTGCACGCTCA
TCGTATCGATACCTTTTCCGTTGACCGCTCTATTCTATCTGGCTACACTAGTAAACGGACAGCACTACTAGATGATAGTT
TCAAGCCATCTGACTACGGTATTGTTACCAAGAAATCAAATACAGAGCTCAACGACTATCTTGATAACTTGGTTACTAAA
TGGAGCAAGGATGGTAGTTTGCAGAAACTTTATGACCGTTACAAGCTCAAACCATCTAGCCATACTGCAGATTAA

Upstream 100 bases:

>100_bases
GTCGATAACTTTTTTGACAATCCAAGCGAACCTCGTGCCCAACAATTCCTCAGCAAAATTATCAACCACGAAAGTGACAA
AGTCAAATAAGGAGGCGCCT

Downstream 100 bases:

>100_bases
GGAGGACACCCCATGACAGATTTATCATCTTGGACAGCCTATTTTCAGGATTTTGGACAATTTTTCAATGGTTTCCTCTT
CACCCTTGCCCTAGCGGTTG

Product: amino acid ABC transporter amino acid-binding protein

Products: NA

Alternate protein names: CBF1; PEB1 [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKKKFFLSALLISLFGLAAAKPVQADTSIADIQKRGELVVGVKQDVPNFGYKDPKTGTYSGIETDLAKMVADELKVKIRY
VPVTAQTRGPLLDNEQVDMDIATFTITDERKKLYNFTSPYYTDASGFLVNKSAKIKKIEDLNGKTIGVAQGSITQRLITE
LGKKKGLKFKFVELGSYPELITSLHAHRIDTFSVDRSILSGYTSKRTALLDDSFKPSDYGIVTKKSNTELNDYLDNLVTK
WSKDGSLQKLYDRYKLKPSSHTAD

Sequences:

>Translated_264_residues
MKKKFFLSALLISLFGLAAAKPVQADTSIADIQKRGELVVGVKQDVPNFGYKDPKTGTYSGIETDLAKMVADELKVKIRY
VPVTAQTRGPLLDNEQVDMDIATFTITDERKKLYNFTSPYYTDASGFLVNKSAKIKKIEDLNGKTIGVAQGSITQRLITE
LGKKKGLKFKFVELGSYPELITSLHAHRIDTFSVDRSILSGYTSKRTALLDDSFKPSDYGIVTKKSNTELNDYLDNLVTK
WSKDGSLQKLYDRYKLKPSSHTAD
>Mature_264_residues
MKKKFFLSALLISLFGLAAAKPVQADTSIADIQKRGELVVGVKQDVPNFGYKDPKTGTYSGIETDLAKMVADELKVKIRY
VPVTAQTRGPLLDNEQVDMDIATFTITDERKKLYNFTSPYYTDASGFLVNKSAKIKKIEDLNGKTIGVAQGSITQRLITE
LGKKKGLKFKFVELGSYPELITSLHAHRIDTFSVDRSILSGYTSKRTALLDDSFKPSDYGIVTKKSNTELNDYLDNLVTK
WSKDGSLQKLYDRYKLKPSSHTAD

Specific function: Common antigen and a major cell adherence molecule. Most probably involved, with PEB1C, in a binding-protein-dependent transport system for an amino acid. May be involved in binding to intestinal cells [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell surface [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=262, Percent_Identity=25.9541984732824, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786876, Length=245, Percent_Identity=22.4489795918367, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787088, Length=201, Percent_Identity=27.8606965174129, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787085, Length=260, Percent_Identity=26.1538461538462, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787031, Length=205, Percent_Identity=30.2439024390244, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788649, Length=265, Percent_Identity=23.7735849056604, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 29454; Mature: 29454

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKFFLSALLISLFGLAAAKPVQADTSIADIQKRGELVVGVKQDVPNFGYKDPKTGTYS
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCCCC
GIETDLAKMVADELKVKIRYVPVTAQTRGPLLDNEQVDMDIATFTITDERKKLYNFTSPY
CHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEHHHHHHHCCCCCC
YTDASGFLVNKSAKIKKIEDLNGKTIGVAQGSITQRLITELGKKKGLKFKFVELGSYPEL
EECCCCEEEECCCCEEHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHH
ITSLHAHRIDTFSVDRSILSGYTSKRTALLDDSFKPSDYGIVTKKSNTELNDYLDNLVTK
HHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHH
WSKDGSLQKLYDRYKLKPSSHTAD
HCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKKFFLSALLISLFGLAAAKPVQADTSIADIQKRGELVVGVKQDVPNFGYKDPKTGTYS
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCCCC
GIETDLAKMVADELKVKIRYVPVTAQTRGPLLDNEQVDMDIATFTITDERKKLYNFTSPY
CHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEHHHHHHHCCCCCC
YTDASGFLVNKSAKIKKIEDLNGKTIGVAQGSITQRLITELGKKKGLKFKFVELGSYPEL
EECCCCEEEECCCCEEHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHH
ITSLHAHRIDTFSVDRSILSGYTSKRTALLDDSFKPSDYGIVTKKSNTELNDYLDNLVTK
HHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHH
WSKDGSLQKLYDRYKLKPSSHTAD
HCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10688204; 1885571 [H]