Click here to switch to the map view.

The map label for this gene is yfnB [H]

Identifier: 116516454

GI number: 116516454

Start: 1059796

End: 1060509

Strand: Reverse

Name: yfnB [H]

Synonym: SPD_1034

Alternate gene names: 116516454

Gene position: 1060509-1059796 (Counterclockwise)

Preceding gene: 116516248

Following gene: 116515370

Centisome position: 51.83

GC content: 41.04

Gene sequence:

>714_bases
TTGTTCTACAAATTTCTACTCTTCGACCTCGACCACACTCTTCTTGATTTTGATGCTGCTGAGGATGTGGCTTTGACCCA
ACTTCTAAAAGAAGAAGGAGTTGCGGATATTCAGGCTTATAAAGATTATTACGTTCCTATGAACAAGGCTCTCTGGAAAG
ACTTGGAGCTGAAGAAAATCAGTAAACAAGAGTTGGTTAACACGCGCTTTTCTCGTTTATTTTCTCATTTTGGACAGGAA
AAAGACGGTAGTTTTCTTGCCCAGCGTTACCAATTTTATCTCGCTCAGCAGGGACAAACACTATCGGGCGCTCATGATCT
CTTGGACAGCCTCATTGAGCGTGATTATGACTTGTATGCTGCGACAAATGGCATTACTGCCATTCAGACAGGACGTTTGG
CTCAATCTGGTCTAGTACCTTATTTCAATCAAGTCTTTATCTCAGAACAGTTGCAAACTCAAAAGCCGGATGCTCTCTTT
TATGAAAAGATTGGCCAGCAAATTGCTGGATTTAGTAAAGAAAAGACGCTGATGATTGGAGATTCTCTAACCGCCGACAT
TCAAGGTGGCAATAATGCGGGGATTGACACTATCTGGTATAATCCTCATCACCTCGAAAATCACACACAAGCCCAGCCGA
CTTACGAAGTCTATTCTTACCAAGACTTGCTGGATTGTTTAGATAAAAATATTCTTGAAAAGATCACATTTTAA

Upstream 100 bases:

>100_bases
GAAAGTGTTCGAATTTTTTTAAGTGATTAAATTAGTTAATTGTATGAGGTGCTTTATGATATAATGTTCTTAATGAATTT
TCAGAAAGGAAAACCTCAAA

Downstream 100 bases:

>100_bases
AGGAGATTAGCTAATGACTACAAAAAAAGCTAATATTACTATTGAAGAGTACATTGAAATGTCTGAAGTTGATTTTAATG
AAGCTGTTAATTATGAATTT

Product: hydrolase, haloacid dehalogenase-like family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MFYKFLLFDLDHTLLDFDAAEDVALTQLLKEEGVADIQAYKDYYVPMNKALWKDLELKKISKQELVNTRFSRLFSHFGQE
KDGSFLAQRYQFYLAQQGQTLSGAHDLLDSLIERDYDLYAATNGITAIQTGRLAQSGLVPYFNQVFISEQLQTQKPDALF
YEKIGQQIAGFSKEKTLMIGDSLTADIQGGNNAGIDTIWYNPHHLENHTQAQPTYEVYSYQDLLDCLDKNILEKITF

Sequences:

>Translated_237_residues
MFYKFLLFDLDHTLLDFDAAEDVALTQLLKEEGVADIQAYKDYYVPMNKALWKDLELKKISKQELVNTRFSRLFSHFGQE
KDGSFLAQRYQFYLAQQGQTLSGAHDLLDSLIERDYDLYAATNGITAIQTGRLAQSGLVPYFNQVFISEQLQTQKPDALF
YEKIGQQIAGFSKEKTLMIGDSLTADIQGGNNAGIDTIWYNPHHLENHTQAQPTYEVYSYQDLLDCLDKNILEKITF
>Mature_237_residues
MFYKFLLFDLDHTLLDFDAAEDVALTQLLKEEGVADIQAYKDYYVPMNKALWKDLELKKISKQELVNTRFSRLFSHFGQE
KDGSFLAQRYQFYLAQQGQTLSGAHDLLDSLIERDYDLYAATNGITAIQTGRLAQSGLVPYFNQVFISEQLQTQKPDALF
YEKIGQQIAGFSKEKTLMIGDSLTADIQGGNNAGIDTIWYNPHHLENHTQAQPTYEVYSYQDLLDCLDKNILEKITF

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. YjjG family [H]

Homologues:

Organism=Escherichia coli, GI1790833, Length=231, Percent_Identity=30.7359307359307, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR011951 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 27180; Mature: 27180

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYKFLLFDLDHTLLDFDAAEDVALTQLLKEEGVADIQAYKDYYVPMNKALWKDLELKKI
CCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
SKQELVNTRFSRLFSHFGQEKDGSFLAQRYQFYLAQQGQTLSGAHDLLDSLIERDYDLYA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEE
ATNGITAIQTGRLAQSGLVPYFNQVFISEQLQTQKPDALFYEKIGQQIAGFSKEKTLMIG
ECCCCEEEECCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEC
DSLTADIQGGNNAGIDTIWYNPHHLENHTQAQPTYEVYSYQDLLDCLDKNILEKITF
CCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFYKFLLFDLDHTLLDFDAAEDVALTQLLKEEGVADIQAYKDYYVPMNKALWKDLELKKI
CCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
SKQELVNTRFSRLFSHFGQEKDGSFLAQRYQFYLAQQGQTLSGAHDLLDSLIERDYDLYA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEE
ATNGITAIQTGRLAQSGLVPYFNQVFISEQLQTQKPDALFYEKIGQQIAGFSKEKTLMIG
ECCCCEEEECCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEC
DSLTADIQGGNNAGIDTIWYNPHHLENHTQAQPTYEVYSYQDLLDCLDKNILEKITF
CCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]