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The map label for this gene is yhfE [H]

Identifier: 116516393

GI number: 116516393

Start: 559742

End: 560779

Strand: Direct

Name: yhfE [H]

Synonym: SPD_0547

Alternate gene names: 116516393

Gene position: 559742-560779 (Clockwise)

Preceding gene: 116516855

Following gene: 116515557

Centisome position: 27.36

GC content: 45.38

Gene sequence:

>1038_bases
ATGAATCAAACAGTAGAATATATCAAAGAACTGACAGCCATTGCGTCGCCAACAGGCTTTACTCGTGAGATTGCGGACTA
TTTAGTCAAGACTCTAGAAGGTTTTGGTTACCAGCCGGTTCGCACATCCAAGGGCGGTGTCAATGTAACTATTAAAGGTC
AAAATGATGAGCAACATCGCTATGTGACTGCCCATGTAGATACGCTTGGTGCTATTGTCCGTGCTGTCAAACCAGACGGC
CGTCTCAAAATGGACCGTATCGGTGGCTTTCCTTGGAACATGATTGAAGGAGAAAACTGTACCATTCATGTGGCTAGCAC
AGGTGAAAAAGTATCAGGAACCATCCTCATCCACCAAACTTCTTGCCATGTCTATAAGGATGCAGGAACTGCAGAACGCA
CGCAAGACAATATGGAAGTGCGTTTGGACGCCAAAGTAACTAGTGAAAAAGAAACTCGTGCTCTTGGCATTGAGGTCGGT
GATTTTATCAGTTTTGACCCACGAACTGTCGTGACAGAGACAGGTTTTATCAAGTCTCGCCATTTGGATGACAAGGTCAG
TGCGGCGATTTTGCTCAATCTCCTTCGCATTTATAAGGAAGAGAAGATTGAATTGCCCGTAACAACTCATTTTGCTTTTT
CAGTCTTTGAAGAAGTGGGACACGGTGCAAACTCTAACATTCCTGCTCAGGTAGTAGAATATCTGGCTGTGGATATGGGA
GCCATGGGAGATGACCAGCAAACAGACGAATATACAGTGTCTATCTGTGTCAAGGATGCTTCTGGACCTTATCACTATGA
CTTCCGTCAACATTTGGTGGCTTTGGCGAAAGAGCAAGATATTCCATTTAAGCTGGATATCTATCCATTTTATGGTTCGG
ACGCTTCAGCGGCTATGTCTGCAGGGGCAGAAGTCAAACACGCCCTTCTCGGTGCTGGTATAGAGTCTAGCCATTCCTAT
GAGCGTACCCATATTGACTCGGTGATCGCAACAGAACGAATGGTCGATGCTTATCTTAAGAGCACGTTGGTGGACTAA

Upstream 100 bases:

>100_bases
TTGAGTATAAAATCACTTTTGTAGTCAAGTCTACAGGAGTGATTTTCTTTTTTTATCCGATGATAAATGTGTTATAATAG
GTAGCAAAAGAGGTGAAGAA

Downstream 100 bases:

>100_bases
TATGTGCCTTATTTGTCAGAGAATTGACCTCATCAAGAAGGAAGAAAATCCTTACTTTGTCAAAGAGTTGGAAACAGGCT
ATCTTGTGGTTGGAGACCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNQTVEYIKELTAIASPTGFTREIADYLVKTLEGFGYQPVRTSKGGVNVTIKGQNDEQHRYVTAHVDTLGAIVRAVKPDG
RLKMDRIGGFPWNMIEGENCTIHVASTGEKVSGTILIHQTSCHVYKDAGTAERTQDNMEVRLDAKVTSEKETRALGIEVG
DFISFDPRTVVTETGFIKSRHLDDKVSAAILLNLLRIYKEEKIELPVTTHFAFSVFEEVGHGANSNIPAQVVEYLAVDMG
AMGDDQQTDEYTVSICVKDASGPYHYDFRQHLVALAKEQDIPFKLDIYPFYGSDASAAMSAGAEVKHALLGAGIESSHSY
ERTHIDSVIATERMVDAYLKSTLVD

Sequences:

>Translated_345_residues
MNQTVEYIKELTAIASPTGFTREIADYLVKTLEGFGYQPVRTSKGGVNVTIKGQNDEQHRYVTAHVDTLGAIVRAVKPDG
RLKMDRIGGFPWNMIEGENCTIHVASTGEKVSGTILIHQTSCHVYKDAGTAERTQDNMEVRLDAKVTSEKETRALGIEVG
DFISFDPRTVVTETGFIKSRHLDDKVSAAILLNLLRIYKEEKIELPVTTHFAFSVFEEVGHGANSNIPAQVVEYLAVDMG
AMGDDQQTDEYTVSICVKDASGPYHYDFRQHLVALAKEQDIPFKLDIYPFYGSDASAAMSAGAEVKHALLGAGIESSHSY
ERTHIDSVIATERMVDAYLKSTLVD
>Mature_345_residues
MNQTVEYIKELTAIASPTGFTREIADYLVKTLEGFGYQPVRTSKGGVNVTIKGQNDEQHRYVTAHVDTLGAIVRAVKPDG
RLKMDRIGGFPWNMIEGENCTIHVASTGEKVSGTILIHQTSCHVYKDAGTAERTQDNMEVRLDAKVTSEKETRALGIEVG
DFISFDPRTVVTETGFIKSRHLDDKVSAAILLNLLRIYKEEKIELPVTTHFAFSVFEEVGHGANSNIPAQVVEYLAVDMG
AMGDDQQTDEYTVSICVKDASGPYHYDFRQHLVALAKEQDIPFKLDIYPFYGSDASAAMSAGAEVKHALLGAGIESSHSY
ERTHIDSVIATERMVDAYLKSTLVD

Specific function: Unknown

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=307, Percent_Identity=25.4071661237785, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38041; Mature: 38041

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTVEYIKELTAIASPTGFTREIADYLVKTLEGFGYQPVRTSKGGVNVTIKGQNDEQHR
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCCE
YVTAHVDTLGAIVRAVKPDGRLKMDRIGGFPWNMIEGENCTIHVASTGEKVSGTILIHQT
EEEEEHHHHHHHHHHCCCCCCEEHHHCCCCCCCEECCCCCEEEEECCCCEEEEEEEEEEC
SCHVYKDAGTAERTQDNMEVRLDAKVTSEKETRALGIEVGDFISFDPRTVVTETGFIKSR
CCEEEECCCCCCCCCCCCEEEEEEEECCCCCHHEECCEECCCCCCCCCEEEEECCCCCCC
HLDDKVSAAILLNLLRIYKEEKIELPVTTHFAFSVFEEVGHGANSNIPAQVVEYLAVDMG
CCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
AMGDDQQTDEYTVSICVKDASGPYHYDFRQHLVALAKEQDIPFKLDIYPFYGSDASAAMS
CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHH
AGAEVKHALLGAGIESSHSYERTHIDSVIATERMVDAYLKSTLVD
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQTVEYIKELTAIASPTGFTREIADYLVKTLEGFGYQPVRTSKGGVNVTIKGQNDEQHR
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCCE
YVTAHVDTLGAIVRAVKPDGRLKMDRIGGFPWNMIEGENCTIHVASTGEKVSGTILIHQT
EEEEEHHHHHHHHHHCCCCCCEEHHHCCCCCCCEECCCCCEEEEECCCCEEEEEEEEEEC
SCHVYKDAGTAERTQDNMEVRLDAKVTSEKETRALGIEVGDFISFDPRTVVTETGFIKSR
CCEEEECCCCCCCCCCCCEEEEEEEECCCCCHHEECCEECCCCCCCCCEEEEECCCCCCC
HLDDKVSAAILLNLLRIYKEEKIELPVTTHFAFSVFEEVGHGANSNIPAQVVEYLAVDMG
CCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
AMGDDQQTDEYTVSICVKDASGPYHYDFRQHLVALAKEQDIPFKLDIYPFYGSDASAAMS
CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHH
AGAEVKHALLGAGIESSHSYERTHIDSVIATERMVDAYLKSTLVD
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]