BacMap

Definition	Streptococcus pneumoniae D39, complete genome.
Accession	NC_008533
Length	2,046,115

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The map label for this gene is yybJ [H]

Identifier: 116516316

GI number: 116516316

Start: 1536881

End: 1537531

Strand: Reverse

Name: yybJ [H]

Synonym: SPD_1514

Alternate gene names: 116516316

Gene position: 1537531-1536881 (Counterclockwise)

Preceding gene: 116515682

Following gene: 116515410

Centisome position: 75.14

GC content: 32.72

Gene sequence:

>651_bases
ATGAAACTTGAAATTATAAATGGACAGAAAATTTATGGGAAAAGACCTATTTTAAATCAGTTGAATTTGGTGTTTCAATC
AGGAAAAATTTATGGACTTAAAGGTGATAATGGATCTAGCAAGACGGTTCTTTTAAAGGTACTTGCTGGTTATATTAAGC
TTGACAAAGGAAAAGTTCTTCAAGATGGTAAAGTTTACGGGATAAAAAATCATTATATTCAGGATGCAGGAATTTTAATT
GAAAAAGTCGAGTTTTTATCTCATTTATCCCTGAGAGAAAATTTGGAACTGTTAAGGTATTTTTCATCTAAAGTTACGGA
AAAAAGAATTGCCTATTGGATTCAATACTATGATTTACAGGAATTTGAAGACGTTGAATACCGGCATTTATCCTTGGGAA
CAAAGCAAAAAATGGCCTTGATTCAAGCCTTTATTTCTTCTCCTTCTATACTCTTTCTCGATGAACCTATGAATGCTTTG
GATGAGAAGAGTGTGAGGTTAACCAAACAGGTCATTTTATCTTACCTGAAAAAAGAAAATGGTCTGGTTATCCTGACGTC
GCACATATCGGAAGATATTTCAGACCTTTGTACAGATGTATTAGTTGTCGAAAATGGACATATACAATATGTAAAGGATA
TACAATCCTAG

Upstream 100 bases:

>100_bases
GATGATGGATCATATTGTAACAGTGTATTTACTACTCTTAAGCTTATTAGTTATGTTGATTGTTAGTCGCTTGGAAGAGA
AATTTAAGAAAGGATAAACG

Downstream 100 bases:

>100_bases
GAGATGGCTTATGGCACATCTAAAATCATTTATTACACGCTATTCTAAGGTCTATATTGGTTTAGTTCTGTTGATCTGGA
TTGCTTTCTTCTTTCTTCCT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSSKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS

Sequences:

>Translated_216_residues
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSSKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS
>Mature_216_residues
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSSKTVLLKVLAGYIKLDKGKVLQDGKVYGIKNHYIQDAGILI
EKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQEFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNAL
DEKSVRLTKQVILSYLKKENGLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS

Specific function: Part Of The Abc Transporter Complex Fbpabc Involved In Ferric Cations Import. Responsible For Energy Coupling To The Transport System (By Similarity). [C]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=223, Percent_Identity=30.9417040358744, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI47078218, Length=223, Percent_Identity=30.9417040358744, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI30795238, Length=222, Percent_Identity=30.6306306306306, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI27881501, Length=222, Percent_Identity=30.6306306306306, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI21536376, Length=219, Percent_Identity=28.7671232876712, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=29.2452830188679, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI153792144, Length=208, Percent_Identity=21.6346153846154, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI6005701, Length=201, Percent_Identity=24.3781094527363, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=27.4418604651163, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=23.0769230769231, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27436953, Length=197, Percent_Identity=24.3654822335025, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI150417984, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI31657092, Length=203, Percent_Identity=25.615763546798, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27262624, Length=202, Percent_Identity=23.2673267326733, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI27262626, Length=202, Percent_Identity=23.2673267326733, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI89111135, Length=207, Percent_Identity=25.6038647342995, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI87081709, Length=217, Percent_Identity=26.7281105990783, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081782, Length=201, Percent_Identity=30.3482587064677, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=24.6376811594203, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=26.7281105990783, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787370, Length=208, Percent_Identity=25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994943, Length=201, Percent_Identity=23.8805970149254, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787712, Length=213, Percent_Identity=24.4131455399061, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=27, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=25.2380952380952, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1789593, Length=209, Percent_Identity=24.4019138755981, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790467, Length=213, Percent_Identity=23.943661971831, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=22.6851851851852, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=198, Percent_Identity=26.2626262626263, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788450, Length=207, Percent_Identity=24.1545893719807, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789672, Length=169, Percent_Identity=26.0355029585799, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=26.9767441860465, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=26.6990291262136, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786253, Length=194, Percent_Identity=22.680412371134, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI87082064, Length=184, Percent_Identity=27.7173913043478, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082268, Length=204, Percent_Identity=25.9803921568627, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788472, Length=201, Percent_Identity=28.8557213930348, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788210, Length=195, Percent_Identity=25.1282051282051, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=198, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=206, Percent_Identity=24.7572815533981, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6325030, Length=214, Percent_Identity=29.4392523364486, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324498, Length=227, Percent_Identity=28.6343612334802, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007328, Length=220, Percent_Identity=26.3636363636364, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI28574150, Length=220, Percent_Identity=26.3636363636364, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI116007184, Length=217, Percent_Identity=29.9539170506912, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221500365, Length=217, Percent_Identity=29.9539170506912, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24666092, Length=212, Percent_Identity=25.4716981132075, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24650855, Length=212, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650853, Length=212, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=26.5402843601896, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281362751, Length=212, Percent_Identity=26.8867924528302, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI221512771, Length=216, Percent_Identity=23.6111111111111, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582014, Length=203, Percent_Identity=26.6009852216749, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582012, Length=203, Percent_Identity=26.6009852216749, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581191, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581189, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581193, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581195, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 24713; Mature: 24713

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSSKTVLLKVLAGYIKLDKGKVL
CEEEEECCCEECCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
QDGKVYGIKNHYIQDAGILIEKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNALDEKSVRLTKQVILSYLKKEN
HHCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS
CEEEEEHHHHHHHHHHHHHEEEEECCCEEEHHCCCC
>Mature Secondary Structure
MKLEIINGQKIYGKRPILNQLNLVFQSGKIYGLKGDNGSSKTVLLKVLAGYIKLDKGKVL
CEEEEECCCEECCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
QDGKVYGIKNHYIQDAGILIEKVEFLSHLSLRENLELLRYFSSKVTEKRIAYWIQYYDLQ
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EFEDVEYRHLSLGTKQKMALIQAFISSPSILFLDEPMNALDEKSVRLTKQVILSYLKKEN
HHCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
GLVILTSHISEDISDLCTDVLVVENGHIQYVKDIQS
CEEEEEHHHHHHHHHHHHHEEEEECCCEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]