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The map label for this gene is ybaF [H]

Identifier: 116516262

GI number: 116516262

Start: 2022986

End: 2023780

Strand: Reverse

Name: ybaF [H]

Synonym: SPD_2046

Alternate gene names: 116516262

Gene position: 2023780-2022986 (Counterclockwise)

Preceding gene: 116517082

Following gene: 116516374

Centisome position: 98.91

GC content: 37.99

Gene sequence:

>795_bases
ATGGATAGTATGATTTTGGGGCGTTATATCCCAGGGGATTCGATTGTTCACCGATTGGATCCACGTAGCAAATTGCTTGC
TATGATGCTACTGATTTTGATTGTGTTTTGGGCTAATAACCCCTTGACGAATCTGATTCTTTTTATAGCGACAGGGATAT
TTATTGCCTTGTCAGGAGTATCTCTTTCATTTTTTATTCAGGGCTTGAAGTCTATGTTTTTCTTGATTGCCTTCACAACT
ATTTTTCAACTATTTTTCATTTCTAATGGGAATGTTTTATTTGAGTTTTCGTTTGTGAGAATCACGGATTATGCTTTGCA
ACAAGCTGGGATTATTTTTTGTCGCTTTGTATTGATTATTTTCTTTTCAACTTTGTTAACCTTAACAACCATGCCTTTAA
GTTTGGCATCAGCTGTCGAAGCTTTATTAGCACCTTTAAAGCGTGTGAAAGTTCCAGTTCATGAAATTGGATTGATGCTG
TCTATGAGTTTGCGTTTTGTCCCAACCTTGATGGATGATACGACTCGGATTATGAATGCACAGAAAGCTCGTGGAGTGGA
TTTTGGAGAAGGAAGCATCGTTCAAAAAGTAAAGGCGATGATTCCCATTTTGATTCCTCTTTTTGCGACAAGTTTAAAAC
GTGCAGATTCCTTGGCTATCGCTATGGAAGCGCGTGGCTATCAGGGTGGAAAAGGCAGAAGTCAATACCGACAATTGAAA
TGGACTCTAAAGGATACGCTGACCATTCTTGTTATTCTCGTACTTGGTTGTTGTTTATTTTTCTTAAAATCTTAG

Upstream 100 bases:

>100_bases
GGAGTACCTAAAATTACGGCCTTTTGTAAACGATTGGCTGATAGAGGCGTGTCATTTAAACGATTACCGATTAAGATAGA
GGAGTTCAAGGAGTCGCTAA

Downstream 100 bases:

>100_bases
TAGCTTTCAGGAATTGATAAAAAGTTACTGTAACAGTTTTTGATATAAAGGTAGGGATATGAACCGTTTTAAAAAATCAA
AATATGTCATTATTGTTTTT

Product: cobalt ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDSMILGRYIPGDSIVHRLDPRSKLLAMMLLILIVFWANNPLTNLILFIATGIFIALSGVSLSFFIQGLKSMFFLIAFTT
IFQLFFISNGNVLFEFSFVRITDYALQQAGIIFCRFVLIIFFSTLLTLTTMPLSLASAVEALLAPLKRVKVPVHEIGLML
SMSLRFVPTLMDDTTRIMNAQKARGVDFGEGSIVQKVKAMIPILIPLFATSLKRADSLAIAMEARGYQGGKGRSQYRQLK
WTLKDTLTILVILVLGCCLFFLKS

Sequences:

>Translated_264_residues
MDSMILGRYIPGDSIVHRLDPRSKLLAMMLLILIVFWANNPLTNLILFIATGIFIALSGVSLSFFIQGLKSMFFLIAFTT
IFQLFFISNGNVLFEFSFVRITDYALQQAGIIFCRFVLIIFFSTLLTLTTMPLSLASAVEALLAPLKRVKVPVHEIGLML
SMSLRFVPTLMDDTTRIMNAQKARGVDFGEGSIVQKVKAMIPILIPLFATSLKRADSLAIAMEARGYQGGKGRSQYRQLK
WTLKDTLTILVILVLGCCLFFLKS
>Mature_264_residues
MDSMILGRYIPGDSIVHRLDPRSKLLAMMLLILIVFWANNPLTNLILFIATGIFIALSGVSLSFFIQGLKSMFFLIAFTT
IFQLFFISNGNVLFEFSFVRITDYALQQAGIIFCRFVLIIFFSTLLTLTTMPLSLASAVEALLAPLKRVKVPVHEIGLML
SMSLRFVPTLMDDTTRIMNAQKARGVDFGEGSIVQKVKAMIPILIPLFATSLKRADSLAIAMEARGYQGGKGRSQYRQLK
WTLKDTLTILVILVLGCCLFFLKS

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 29478; Mature: 29478

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSMILGRYIPGDSIVHRLDPRSKLLAMMLLILIVFWANNPLTNLILFIATGIFIALSGV
CCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
SLSFFIQGLKSMFFLIAFTTIFQLFFISNGNVLFEFSFVRITDYALQQAGIIFCRFVLII
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
FFSTLLTLTTMPLSLASAVEALLAPLKRVKVPVHEIGLMLSMSLRFVPTLMDDTTRIMNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKARGVDFGEGSIVQKVKAMIPILIPLFATSLKRADSLAIAMEARGYQGGKGRSQYRQLK
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHH
WTLKDTLTILVILVLGCCLFFLKS
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSMILGRYIPGDSIVHRLDPRSKLLAMMLLILIVFWANNPLTNLILFIATGIFIALSGV
CCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
SLSFFIQGLKSMFFLIAFTTIFQLFFISNGNVLFEFSFVRITDYALQQAGIIFCRFVLII
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
FFSTLLTLTTMPLSLASAVEALLAPLKRVKVPVHEIGLMLSMSLRFVPTLMDDTTRIMNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKARGVDFGEGSIVQKVKAMIPILIPLFATSLKRADSLAIAMEARGYQGGKGRSQYRQLK
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHH
WTLKDTLTILVILVLGCCLFFLKS
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]