| Definition | Streptococcus pneumoniae D39, complete genome. |
|---|---|
| Accession | NC_008533 |
| Length | 2,046,115 |
Click here to switch to the map view.
The map label for this gene is phtD
Identifier: 116516147
GI number: 116516147
Start: 899900
End: 902461
Strand: Direct
Name: phtD
Synonym: SPD_0889
Alternate gene names: NA
Gene position: 899900-902461 (Clockwise)
Preceding gene: 116515739
Following gene: 116516522
Centisome position: 43.98
GC content: 41.57
Gene sequence:
>2562_bases ATGAAAATCAATAAAAAATATCTAGCAGGTTCAGTGGCAGTCCTTGCCCTAAGTGTTTGTTCCTATGAACTTGGTCGTCA CCAAGCTGGTCAGGTTAAGAAAGAGTCTAATCGAGTTTCTTATATAGATGGTGATCAGGCTGGTCAAAAGGCAGAAAATT TGACACCAGATGAAGTCAGTAAGAGAGAGGGGATCAACGCCGAACAAATTGTTATCAAGATTACGGATCAAGGTTATGTG ACCTCTCATGGAGACCATTATCATTACTATAATGGCAAGGTTCCTTATGATGCCATCATCAGTGAAGAACTTCTCATGAA AGATCCGAATTATCAGTTGAAGGATTCAGACATTGTCAATGAAATCAAGGGTGGCTATGTGATTAAGGTAGACGGAAAAT ACTATGTTTACCTTAAAGATGCGGCCCATGCGGACAATATTCGGACAAAAGAAGAGATTAAACGTCAGAAGCAGGAACGC AGTCATAATCACAACTCAAGAGCAGATAATGCTGTTGCTGCAGCCAGAGCCCAAGGACGTTATACAACGGATGATGGGTA TATCTTCAATGCTTCTGATATCATTGAAGATACTGGTGATGCTTATATCGTTCCTCACGGCGACCATTACCATTACATTC CTAAGAGTGATTTGTCTGCCAGTGAATTAGCTGCTGCCCAAGCCTATTGGAATGGGAAGCAGGGATCTCGTCCTTCTTCA AGTTCTAGTCATAATGCAAATCCAGCTCAACCAAGATTGTCAGAGAACCACAATCTGACTGTCACTCCAACTTATCATCA AAATCAAGGGGAAAACATTTCAAGCCTTTTACGTGAATTGTATGCTAAACCCTTATCAGAACGCCATGTAGAATCTGATG GCCTTATTTTCGACCCAGCGCAAATCACAAGTCGAACCGCCAATGGTGTTGCTGTACCGCACGGAGACCATTATCACTTT ATTCCTTATTCACAACTGTCACCTTTGGAAGAAAAATTGGCTCGTATTATTCCCCTTCGTTATCGTTCAAACCATTGGGT ACCAGATTCAAGACCAGAACAACCAAGTCCACAATCGACTCCGGAACCTAGTCCAAGTCCGCAACCTGCACCAAATCCTC AACCAGCTCCAAGCAATCCAATTGATGAGAAATTGGTCAAAGAAGCTGTTCGAAAAGTAGGCGATGGTTATGTCTTTGAG GAGAATGGAGTTCCTCGTTATATCCCAGCCAAGGATCTTTCAGCAGAAACAGCAGCAGGCATTGATAGCAAACTGGCCAA GCAGGAAAGTTTATCTCATAAGCTAGGAGCTAAGAAAACTGACCTCCCATCTAGTGATAGAGAATTTTACAATAAGGCTT ATGACTTACTAGCAAGAATTCATCAAGATTTACTTGATAATAAAGGTCGACAAGTTGATTTTGAGGCTTTGGATAACCTG TTGGAACGACTCAAGGATGTCTCAAGTGATAAAGTCAAGTTAGTGGATGATATTCTTGCCTTCTTAGCTCCGATTCGTCA TCCAGAACGTTTAGGAAAACCAAATGCGCAAATTACCTACACTGATGATGAGATTCAAGTAGCCAAGTTGGCAGGCAAGT ACACAACAGAAGACGGTTATATCTTTGATCCTCGTGATATAACCAGTGATGAGGGGGATGCCTATGTAACTCCACATATG ACCCATAGCCACTGGATTAAAAAAGATAGTTTGTCTGAAGCTGAGAGAGCGGCAGCCCAGGCTTATGCTAAAGAGAAAGG TTTGACCCCTCCTTCGACAGACCATCAGGATTCAGGAAATACTGAGGCAAAAGGAGCAGAAGCTATCTACAACCGCGTGA AAGCAGCTAAGAAGGTGCCACTTGATCGTATGCCTTACAATCTTCAATATACTGTAGAAGTCAAAAACGGTAGTTTAATC ATACCTCATTATGACCATTACCATAACATCAAATTTGAGTGGTTTGACGAAGGCCTTTATGAGGCACCTAAGGGGTATAG TCTTGAGGATCTTTTGGCGACTGTCAAGTACTATGTCGAACATCCAAACGAACGTCCGCATTCAGATAATGGTTTTGGTA ACGCTAGCGACCATGTTCAAAGAAACAAAAATGGTCAAGCTGATACCAATCAAACGGAAAAACCAAACGAGGAGAAACCT CAGACAGAAAAACCTGAGGAAGATAAGGAACATGATGAAGTAAGTGAGCCAACTCACCCTGAATCTGATGAAAAAGAGAA TCACGTTGGTTTAAATCCTTCAGCAGATAATCTTTATAAACCAAGCACTGATACGGAAGAGACAGAGGAAGAAGCTGAAG ATACTACAGATGAGGCTGAAATTCCTCAAGTAGAGCATTCTGTTATTAACGCTAAGATAGCAGAGGCGGAGGCCTTGCTA GAAAAAGTAACAGATTCTAGTATTAGACAAAATGCTGTGGAGACATTGACTGGTCTAAAAAGTAGTCTTCTTCTCGGAAC GAAAGATAATAACACTATTTCAGCAGAAGTAGATAGTCTCTTGGCTTTGTTAAAAGAAAGTCAACCGACTCCTATACAGT AG
Upstream 100 bases:
>100_bases CTGAATCCTTTAGAGTCAGACCCACAAAATGACAAGACCTATTTAGAAAATCTTGAAGAAAATATGAGTATTCTAGCAGA AGAATTAAAGTGAGGAAAGA
Downstream 100 bases:
>100_bases TAAAATGAATGGAGCATATTTTATGGAGAAGTAACCTTTCGTGTTACTTCTCTTTTTTAGAAAAACGTAACAGAAACTTG ACAAAAGTAATTTTAAATAG
Product: pneumococcal histidine triad protein D precursor
Products: NA
Alternate protein names: Pneumococcal Histidine Triad Protein B; Histidine Triad Family Protein; Pneumococcal Histidine Triad Protein A; Histidine Triad Protein; Pneumococcal Histidine Triad A Protein; Pneumococcal Histidine Triad Protein D ; Pneumococcal Histidine Triad Protein D; Pneumococcal Histidine Triad Protein E; Histidine Motif-Containing Protein; Lipoprotein; Streptococcal Histidine Triad Family Protein
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVSKREGINAEQIVIKITDQGYV TSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVNEIKGGYVIKVDGKYYVYLKDAAHADNIRTKEEIKRQKQER SHNHNSRADNAVAAARAQGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKSDLSASELAAAQAYWNGKQGSRPSS SSSHNANPAQPRLSENHNLTVTPTYHQNQGENISSLLRELYAKPLSERHVESDGLIFDPAQITSRTANGVAVPHGDHYHF IPYSQLSPLEEKLARIIPLRYRSNHWVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFE ENGVPRYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNL LERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHM THSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLI IPHYDHYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKP QTEKPEEDKEHDEVSEPTHPESDEKENHVGLNPSADNLYKPSTDTEETEEEAEDTTDEAEIPQVEHSVINAKIAEAEALL EKVTDSSIRQNAVETLTGLKSSLLLGTKDNNTISAEVDSLLALLKESQPTPIQ
Sequences:
>Translated_853_residues MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVSKREGINAEQIVIKITDQGYV TSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVNEIKGGYVIKVDGKYYVYLKDAAHADNIRTKEEIKRQKQER SHNHNSRADNAVAAARAQGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKSDLSASELAAAQAYWNGKQGSRPSS SSSHNANPAQPRLSENHNLTVTPTYHQNQGENISSLLRELYAKPLSERHVESDGLIFDPAQITSRTANGVAVPHGDHYHF IPYSQLSPLEEKLARIIPLRYRSNHWVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFE ENGVPRYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNL LERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHM THSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLI IPHYDHYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKP QTEKPEEDKEHDEVSEPTHPESDEKENHVGLNPSADNLYKPSTDTEETEEEAEDTTDEAEIPQVEHSVINAKIAEAEALL EKVTDSSIRQNAVETLTGLKSSLLLGTKDNNTISAEVDSLLALLKESQPTPIQ >Mature_853_residues MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVSKREGINAEQIVIKITDQGYV TSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVNEIKGGYVIKVDGKYYVYLKDAAHADNIRTKEEIKRQKQER SHNHNSRADNAVAAARAQGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKSDLSASELAAAQAYWNGKQGSRPSS SSSHNANPAQPRLSENHNLTVTPTYHQNQGENISSLLRELYAKPLSERHVESDGLIFDPAQITSRTANGVAVPHGDHYHF IPYSQLSPLEEKLARIIPLRYRSNHWVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFE ENGVPRYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNL LERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHM THSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLI IPHYDHYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKP QTEKPEEDKEHDEVSEPTHPESDEKENHVGLNPSADNLYKPSTDTEETEEEAEDTTDEAEIPQVEHSVINAKIAEAEALL EKVTDSSIRQNAVETLTGLKSSLLLGTKDNNTISAEVDSLLALLKESQPTPIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95226; Mature: 95226
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVS CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEECCCHHCCHHCCCCHHHHH KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVN HHCCCCCEEEEEEEECCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHH EIKGGYVIKVDGKYYVYLKDAAHADNIRTKEEIKRQKQERSHNHNSRADNAVAAARAQGR HHCCCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC YTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKSDLSASELAAAQAYWNGKQGSRPSS EECCCCEEECHHHHHHCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCC SSSHNANPAQPRLSENHNLTVTPTYHQNQGENISSLLRELYAKPLSERHVESDGLIFDPA CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCEEECHH QITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPLRYRSNHWVPDSRPEQPSPQST HHHHCCCCCEECCCCCCEEECCHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC PEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVPRYIPAKDLSAETAAG CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHC IDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNL CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHH LERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGY HHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCEEEEHHCCCEECCCCE IFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGN EECCCCCCCCCCCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC TEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYDHYHNIKFEWFDEGLY CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCEEEEECCCHH EAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKP CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC QTEKPEEDKEHDEVSEPTHPESDEKENHVGLNPSADNLYKPSTDTEETEEEAEDTTDEAE CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC IPQVEHSVINAKIAEAEALLEKVTDSSIRQNAVETLTGLKSSLLLGTKDNNTISAEVDSL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEHHHHHHH LALLKESQPTPIQ HHHHHCCCCCCCC >Mature Secondary Structure MKINKKYLAGSVAVLALSVCSYELGRHQAGQVKKESNRVSYIDGDQAGQKAENLTPDEVS CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEECCCHHCCHHCCCCHHHHH KREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDSDIVN HHCCCCCEEEEEEEECCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHH EIKGGYVIKVDGKYYVYLKDAAHADNIRTKEEIKRQKQERSHNHNSRADNAVAAARAQGR HHCCCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC YTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKSDLSASELAAAQAYWNGKQGSRPSS EECCCCEEECHHHHHHCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCC SSSHNANPAQPRLSENHNLTVTPTYHQNQGENISSLLRELYAKPLSERHVESDGLIFDPA CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCEEECHH QITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPLRYRSNHWVPDSRPEQPSPQST HHHHCCCCCEECCCCCCEEECCHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC PEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVPRYIPAKDLSAETAAG CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHC IDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNL CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHH LERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGY HHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCEEEEHHCCCEECCCCE IFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGN EECCCCCCCCCCCEEECCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC TEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYDHYHNIKFEWFDEGLY CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCEEEEECCCHH EAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKP CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC QTEKPEEDKEHDEVSEPTHPESDEKENHVGLNPSADNLYKPSTDTEETEEEAEDTTDEAE CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC IPQVEHSVINAKIAEAEALLEKVTDSSIRQNAVETLTGLKSSLLLGTKDNNTISAEVDSL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEHHHHHHH LALLKESQPTPIQ HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA