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The map label for this gene is sufD [H]

Identifier: 116516109

GI number: 116516109

Start: 773448

End: 774710

Strand: Direct

Name: sufD [H]

Synonym: SPD_0763

Alternate gene names: 116516109

Gene position: 773448-774710 (Clockwise)

Preceding gene: 116517208

Following gene: 116516952

Centisome position: 37.8

GC content: 42.44

Gene sequence:

>1263_bases
ATGACTAGAGAAAATATTAAACTTTTTTCAGAAATGCACGCTGAACCAAGCTGGTTGGCTGATCTCCGTCAAAAAGCTTT
TGACAAGATTGAGACTTTGGAATTACCAGTTATTGAGCGTGTCAAATTCCACCGTTGGAATCTGGGTGATGGAACGATTA
CAGAAAATGAGCCATCAGCAAATGTTCCAGATTTCACAGCTTTAGATCATCACTTGAAGTTGGTGCAAGTAGGAACTCAA
ACTGTTTTCGAACAAACTCCAGTTGAGTTAGCTGAACAGGGTGTTGTCTTCACAGACTTTCACTCAGCTTTAGAAGAAAT
TCCAGAGCTGATCGAAGAATTCTTCATGTCATCTGTTAAGTATGATGATGACAAGTTGGCGGCTTACCACACAGCTTACT
TTAACAGTGGTGCTGTACTCTATATTCCAGATAACGTAGAAATCACAGAGCCAATTGAAGGAATTTTCTACCAAGATAGC
GATAGCAATGTGCCGTTTAACAAGCATATTATGATTATCGCTGGTAAAAATTCTAAGATTAGTTATCTGGAGCGTTTAGA
GTCACGCGGTGAAGGAAGTGACAAAGCAACTGCCAATATCACAGTGGAAGTGATTGCACGTTCTGGTGCGCAAGTCAAGT
TTGCTGCTATCGACCGTCTAGGTGAAAACGTCACTGCCTACATTAGCCGTCGTGGTAAATTAGGCAACGATGCAAGTATT
GACTGGGCTATCGGTGTCATGAACGAAGGAAATGTCGTTGCTGATTTTGATAGTGACTTGATTGGTAATGGTAGCCATGC
TGACCTCAAGGTTGTAGCTCTTTCAAGTGGTCGTCAGGTACAAGGGATTGATACTCGTGTAACTAACTATGGCTGCAACT
CAATCGGAAACATTCTACAACATGGGGTTATCCTTGAAAAAGCAACTTTGACTTTCAATGGTATCGGCCACATCATCAAG
GGTGCTAAGGGAGCAGATGCGCAACAAGAGAGCCGTGTTCTCATGCTTTCAGACCAAGCGCGTTCAGATGCTAACCCAAT
TCTTTTGATTGATGAAAATGATGTCACTGCAGGACACGCAGCGTCTATCGGACAAGTTGATCCAGAAGACATGTATTACC
TCATGAGTCGTGGATTGGATAAGGCAACTGCAGAGCGTTTGGTTGTTCGTGGTTTCCTTGGATCTGTTATCGTGGAGATT
CCAGTCAAGGAAGTTCGTGATGAAATGATTGCAACTATCGAAGAGAAATTGTCAAAACGCTAA

Upstream 100 bases:

>100_bases
TGCGCGTTTGGAACGTGAAGGATACGCAAAATTAGCTGAAGAACTTGGCTACGACTACAAGGAAGAATTGTAATTCCCTC
GTATCTTTTAGGAGAAGTAA

Downstream 100 bases:

>100_bases
GGGGCAGCCTATGTTAGATGTAGAAGCGATTCGCAAGGATTTTCCAATTTTAGATCAGATTGTCAATGATGAACCTCTGG
TCTATCTGGACAATGCTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTRENIKLFSEMHAEPSWLADLRQKAFDKIETLELPVIERVKFHRWNLGDGTITENEPSANVPDFTALDHHLKLVQVGTQ
TVFEQTPVELAEQGVVFTDFHSALEEIPELIEEFFMSSVKYDDDKLAAYHTAYFNSGAVLYIPDNVEITEPIEGIFYQDS
DSNVPFNKHIMIIAGKNSKISYLERLESRGEGSDKATANITVEVIARSGAQVKFAAIDRLGENVTAYISRRGKLGNDASI
DWAIGVMNEGNVVADFDSDLIGNGSHADLKVVALSSGRQVQGIDTRVTNYGCNSIGNILQHGVILEKATLTFNGIGHIIK
GAKGADAQQESRVLMLSDQARSDANPILLIDENDVTAGHAASIGQVDPEDMYYLMSRGLDKATAERLVVRGFLGSVIVEI
PVKEVRDEMIATIEEKLSKR

Sequences:

>Translated_420_residues
MTRENIKLFSEMHAEPSWLADLRQKAFDKIETLELPVIERVKFHRWNLGDGTITENEPSANVPDFTALDHHLKLVQVGTQ
TVFEQTPVELAEQGVVFTDFHSALEEIPELIEEFFMSSVKYDDDKLAAYHTAYFNSGAVLYIPDNVEITEPIEGIFYQDS
DSNVPFNKHIMIIAGKNSKISYLERLESRGEGSDKATANITVEVIARSGAQVKFAAIDRLGENVTAYISRRGKLGNDASI
DWAIGVMNEGNVVADFDSDLIGNGSHADLKVVALSSGRQVQGIDTRVTNYGCNSIGNILQHGVILEKATLTFNGIGHIIK
GAKGADAQQESRVLMLSDQARSDANPILLIDENDVTAGHAASIGQVDPEDMYYLMSRGLDKATAERLVVRGFLGSVIVEI
PVKEVRDEMIATIEEKLSKR
>Mature_419_residues
TRENIKLFSEMHAEPSWLADLRQKAFDKIETLELPVIERVKFHRWNLGDGTITENEPSANVPDFTALDHHLKLVQVGTQT
VFEQTPVELAEQGVVFTDFHSALEEIPELIEEFFMSSVKYDDDKLAAYHTAYFNSGAVLYIPDNVEITEPIEGIFYQDSD
SNVPFNKHIMIIAGKNSKISYLERLESRGEGSDKATANITVEVIARSGAQVKFAAIDRLGENVTAYISRRGKLGNDASID
WAIGVMNEGNVVADFDSDLIGNGSHADLKVVALSSGRQVQGIDTRVTNYGCNSIGNILQHGVILEKATLTFNGIGHIIKG
AKGADAQQESRVLMLSDQARSDANPILLIDENDVTAGHAASIGQVDPEDMYYLMSRGLDKATAERLVVRGFLGSVIVEIP
VKEVRDEMIATIEEKLSKR

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=443, Percent_Identity=21.8961625282167, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI1787971, Length=172, Percent_Identity=26.1627906976744, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46297; Mature: 46166

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRENIKLFSEMHAEPSWLADLRQKAFDKIETLELPVIERVKFHRWNLGDGTITENEPSA
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCCCCC
NVPDFTALDHHLKLVQVGTQTVFEQTPVELAEQGVVFTDFHSALEEIPELIEEFFMSSVK
CCCCCHHHHHHEEEEEECHHHHHHCCCHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCC
YDDDKLAAYHTAYFNSGAVLYIPDNVEITEPIEGIFYQDSDSNVPFNKHIMIIAGKNSKI
CCCCHHEEEEEEEECCCEEEEECCCCEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCH
SYLERLESRGEGSDKATANITVEVIARSGAQVKFAAIDRLGENVTAYISRRGKLGNDASI
HHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEHHHHCCCCEEHHHHCCCCCCCCCE
DWAIGVMNEGNVVADFDSDLIGNGSHADLKVVALSSGRQVQGIDTRVTNYGCNSIGNILQ
EEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEECCCHHHCCCCCHHHHHHHH
HGVILEKATLTFNGIGHIIKGAKGADAQQESRVLMLSDQARSDANPILLIDENDVTAGHA
CCEEEEEEEEEECCHHHHHCCCCCCCCHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCC
ASIGQVDPEDMYYLMSRGLDKATAERLVVRGFLGSVIVEIPVKEVRDEMIATIEEKLSKR
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRENIKLFSEMHAEPSWLADLRQKAFDKIETLELPVIERVKFHRWNLGDGTITENEPSA
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCCCCC
NVPDFTALDHHLKLVQVGTQTVFEQTPVELAEQGVVFTDFHSALEEIPELIEEFFMSSVK
CCCCCHHHHHHEEEEEECHHHHHHCCCHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCC
YDDDKLAAYHTAYFNSGAVLYIPDNVEITEPIEGIFYQDSDSNVPFNKHIMIIAGKNSKI
CCCCHHEEEEEEEECCCEEEEECCCCEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCH
SYLERLESRGEGSDKATANITVEVIARSGAQVKFAAIDRLGENVTAYISRRGKLGNDASI
HHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEEHHHHCCCCEEHHHHCCCCCCCCCE
DWAIGVMNEGNVVADFDSDLIGNGSHADLKVVALSSGRQVQGIDTRVTNYGCNSIGNILQ
EEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEECCCHHHCCCCCHHHHHHHH
HGVILEKATLTFNGIGHIIKGAKGADAQQESRVLMLSDQARSDANPILLIDENDVTAGHA
CCEEEEEEEEEECCHHHHHCCCCCCCCHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCC
ASIGQVDPEDMYYLMSRGLDKATAERLVVRGFLGSVIVEIPVKEVRDEMIATIEEKLSKR
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]