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The map label for this gene is yrxA [H]

Identifier: 116516020

GI number: 116516020

Start: 1121918

End: 1122433

Strand: Direct

Name: yrxA [H]

Synonym: SPD_1093

Alternate gene names: 116516020

Gene position: 1121918-1122433 (Clockwise)

Preceding gene: 116515778

Following gene: 116516932

Centisome position: 54.83

GC content: 42.64

Gene sequence:

>516_bases
ATGACAAAAGATCGCAAACAAGCCCTGCTCCAACTCTTGAAAGAAGCTCCTAAAGCCCTTAATGGCCAAAGTTTGGCGGA
ACATTTTCATGTCACACGTCAGGTCATTGTGCAGGACATTGCAATTTTGAGAGCCGATGGCGCTCCTATCCTATCCACCA
ATCGTGGCTACATCTATAAGCAAATTGATACCAATCCTTATGTTCACAAACTTTTCAAAGTGAAACATGAAGTTGAAGAA
ATCGGTCAGGAACTCCTTGCTATTGTCGATAATGGTGGGCATGTCCAGAATACCTTGATTGACCATCCCGTTTATGGAGA
AATTGAAACCTTGCTTAAACTGTCTTGTCGCAGAGATGTGCAACATTTTCTAGAACAAGTCGAGCATTCTGACTTTAGAC
CTCTATCTGAATTGACAGATGGCATCCATTACCACCTAGTCGAAGCCGAAACACAACAAGACCTCCACTATATCGAGGAG
GCCTTGGATCAGCTAGGTTATTTAGTAAAAGACTAG

Upstream 100 bases:

>100_bases
TACTAGTTGGATTTGGCACAATTATCCATAGTATGGTAGACTATACATTAGCACTAGCTGTCTATAAAGTGCTTCGAAAA
CGCCGTTAAAAGGAAAAGCT

Downstream 100 bases:

>100_bases
AAGATTTTCTTTTCCCAATCGTCTTCTGTACGGCGAGGGTAGAAAAACTCTGACTTGTCGGGAGCTTCCATCATTTCCAT
CAATGGTAGCATATCATAGG

Product: transcriptional regulator, biotin repressor family protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTKDRKQALLQLLKEAPKALNGQSLAEHFHVTRQVIVQDIAILRADGAPILSTNRGYIYKQIDTNPYVHKLFKVKHEVEE
IGQELLAIVDNGGHVQNTLIDHPVYGEIETLLKLSCRRDVQHFLEQVEHSDFRPLSELTDGIHYHLVEAETQQDLHYIEE
ALDQLGYLVKD

Sequences:

>Translated_171_residues
MTKDRKQALLQLLKEAPKALNGQSLAEHFHVTRQVIVQDIAILRADGAPILSTNRGYIYKQIDTNPYVHKLFKVKHEVEE
IGQELLAIVDNGGHVQNTLIDHPVYGEIETLLKLSCRRDVQHFLEQVEHSDFRPLSELTDGIHYHLVEAETQQDLHYIEE
ALDQLGYLVKD
>Mature_170_residues
TKDRKQALLQLLKEAPKALNGQSLAEHFHVTRQVIVQDIAILRADGAPILSTNRGYIYKQIDTNPYVHKLFKVKHEVEEI
GQELLAIVDNGGHVQNTLIDHPVYGEIETLLKLSCRRDVQHFLEQVEHSDFRPLSELTDGIHYHLVEAETQQDLHYIEEA
LDQLGYLVKD

Specific function: Unknown

COG id: COG1827

COG function: function code R; Predicted small molecule binding protein (contains 3H domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004173
- InterPro:   IPR013196
- InterPro:   IPR011991
- ProDom:   PD469575 [H]

Pfam domain/function: PF02829 3H; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 19625; Mature: 19493

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKDRKQALLQLLKEAPKALNGQSLAEHFHVTRQVIVQDIAILRADGAPILSTNRGYIYK
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEE
QIDTNPYVHKLFKVKHEVEEIGQELLAIVDNGGHVQNTLIDHPVYGEIETLLKLSCRRDV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
QHFLEQVEHSDFRPLSELTDGIHYHLVEAETQQDLHYIEEALDQLGYLVKD
HHHHHHHHCCCCCCHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKDRKQALLQLLKEAPKALNGQSLAEHFHVTRQVIVQDIAILRADGAPILSTNRGYIYK
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEE
QIDTNPYVHKLFKVKHEVEEIGQELLAIVDNGGHVQNTLIDHPVYGEIETLLKLSCRRDV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
QHFLEQVEHSDFRPLSELTDGIHYHLVEAETQQDLHYIEEALDQLGYLVKD
HHHHHHHHCCCCCCHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444804; 9384377 [H]