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The map label for this gene is ps201 [H]

Identifier: 116515952

GI number: 116515952

Start: 1027295

End: 1027741

Strand: Reverse

Name: ps201 [H]

Synonym: SPD_1013

Alternate gene names: 116515952

Gene position: 1027741-1027295 (Counterclockwise)

Preceding gene: 116515851

Following gene: 116517193

Centisome position: 50.23

GC content: 36.91

Gene sequence:

>447_bases
TTGAGAAAACATGGGCTCATATCAAAAAGCACCTCAAAAAGGTATTACCAAGTTGCAATACCTTTTACGAGGCTTTTTTA
TCCTGCTCTTGTTTCAATTGACTATATAAATTGTCTAAGCGAAACAACCGATAAGAATTGGCACAAAAGCGACCGTATTT
TTGTTACCAATACAGGAAAACCAGTTCATAGTTCTATCTTGAGCAAGTCTCTCCAGCGAGCAAACGAACGCCTTAAAAAA
CCAATTCCCAAACATCTGTCCCCTCACATCTTCAGACACACCACTATTAGCATCTTATCAGAAAATAAAATTCCTTTAAA
AACAATCACGGACAGGGTTGATCATTCCGACTCTGAAGTCACTACTTCCATCTACACCCACGTCACAAAGAACATGAAAG
ATGAAGCAATCAATGTACTGGATAAAGTTATGAAAAAGATTTTTTAA

Upstream 100 bases:

>100_bases
AATGCAAGATTCCATAGAATGGGGAAGTTAGAACTTTTATGCGAAGAGTTTGGGCATAAACTTTTACCTCTTCCTCCCTA
CTCACCTGAGTACAATCCTA

Downstream 100 bases:

>100_bases
AAAGTTTTGTCCCTTTTTTGCCCTCTAAATACAAAAATAGCCCTTCGGATAAAATCCGAGGGGCTAGAAACGTTGTTAAA
TCAACGGCCGAACTTTTGAA

Product: integrase/recombinase, phage integrase family protein

Products: NA

Alternate protein names: Int-TnX [H]

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRKHGLISKSTSKRYYQVAIPFTRLFYPALVSIDYINCLSETTDKNWHKSDRIFVTNTGKPVHSSILSKSLQRANERLKK
PIPKHLSPHIFRHTTISILSENKIPLKTITDRVDHSDSEVTTSIYTHVTKNMKDEAINVLDKVMKKIF

Sequences:

>Translated_148_residues
MRKHGLISKSTSKRYYQVAIPFTRLFYPALVSIDYINCLSETTDKNWHKSDRIFVTNTGKPVHSSILSKSLQRANERLKK
PIPKHLSPHIFRHTTISILSENKIPLKTITDRVDHSDSEVTTSIYTHVTKNMKDEAINVLDKVMKKIF
>Mature_148_residues
MRKHGLISKSTSKRYYQVAIPFTRLFYPALVSIDYINCLSETTDKNWHKSDRIFVTNTGKPVHSSILSKSLQRANERLKK
PIPKHLSPHIFRHTTISILSENKIPLKTITDRVDHSDSEVTTSIYTHVTKNMKDEAINVLDKVMKKIF

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 17121; Mature: 17121

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKHGLISKSTSKRYYQVAIPFTRLFYPALVSIDYINCLSETTDKNWHKSDRIFVTNTGK
CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC
PVHSSILSKSLQRANERLKKPIPKHLSPHIFRHTTISILSENKIPLKTITDRVDHSDSEV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHH
TTSIYTHVTKNMKDEAINVLDKVMKKIF
HHHHHHHHHHCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MRKHGLISKSTSKRYYQVAIPFTRLFYPALVSIDYINCLSETTDKNWHKSDRIFVTNTGK
CCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC
PVHSSILSKSLQRANERLKKPIPKHLSPHIFRHTTISILSENKIPLKTITDRVDHSDSEV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHH
TTSIYTHVTKNMKDEAINVLDKVMKKIF
HHHHHHHHHHCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10532372; 11337471 [H]