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The map label for this gene is fni

Identifier: 116515768

GI number: 116515768

Start: 353414

End: 354424

Strand: Direct

Name: fni

Synonym: SPD_0349

Alternate gene names: 116515768

Gene position: 353414-354424 (Clockwise)

Preceding gene: 116517118

Following gene: 116516981

Centisome position: 17.27

GC content: 44.02

Gene sequence:

>1011_bases
ATGACGACAAATCGTAAGGACGAGCATATCCTCTATGCCCTTGAGCAGAAAAGTTCCTATAATAGCTTTGATGAGGTGGA
GCTGATTCATTCTTCCTTGCCTCTTTACAATCTGGATGAAATCGATCTTTCGACAGAGTTTGCTGGTCGAAAGTGGGACT
TTCCTTTTTATATCAATGCCATGACTGGTGGAAGTAATAAGGGAAGAGAAATCAATCAAAAGCTGGCTCAGGTGGCGGAA
ACCTGTGGTATTTTATTTGTAACGGGTTCTTATAGCGCAGCCCTCAAAAATCCAACGGATGATTCTTTTTCTGTCAAGTC
TAGTCATCCCAATCTCCTCCTTGGAACCAATATTGGATTGGACAAGCCTGTCGAGTTAGGACTTCAGACTGTAGAAGAGA
TGAATCCTGTTCTATTGCAAGTGCATGTCAATGTCATGCAGGAATTACTCATGCCCGAGGGAGAAAGGAAGTTTAGAAGC
TGGCAATCGCATCTAGCAGATTATAGCAAGCAAATTCCCGTTCCTATTGTCCTCAAGGAAGTGGGCTTTGGAATGGATGC
CAAGACAATCGAAAGAGCCTATGAATTCGGTGTTCGTACAGTGGACCTATCGGGTCGTGGTGGCACCAGCTTTGCCTATA
TCGAAAACCGTCGTAGTGGCCAGCGTGATTACCTCAATCAATGGGGTCAGTCTACCATGCAGGCCCTTCTCAATGCCCAA
GAATGGAAAGATAAGGTCGAACTCTTGGTTAGTGGAGGGGTTCGGAATCCGCTGGATATGATTAAGTGCTTGGTTTTTGG
TGCTAAGGCTGTGGGATTGTCACGAACCGTTCTGGAATTGGTTGAAACCTACACAGTTGAAGAAGTGATTGGCATTGTCC
AAGGCTGGAAAGCAGATCTACGCTTGATTATGTGTTCCCTTAACTGTGCCACCATAGCAGATCTACAAAAAGTAGACTAT
CTTCTTTATGGAAAATTAAAAGAAGCAAATGATCAGATGAAAAAGGCGTAA

Upstream 100 bases:

>100_bases
TGTGGCATCGCCCTGAGTTTTGATGCGCAATCAACCAAAACCTTAAAAAATCGTTGGGCCGATCTGGGGATTGAGCTCTT
ATATCAAGAAAGGATAGGAC

Downstream 100 bases:

>100_bases
CCAGCGCCTTTTTTTCCATCCTCAGACTGAGGTGACTTTTTTGAATTGTGATAAAATAGAAGGGAGAGGATGAACCTATG
AGAAAATTTAAAATCTTTTT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINAMTGGSNKGREINQKLAQVAE
TCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGLDKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRS
WQSHLADYSKQIPVPIVLKEVGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
EWKDKVELLVSGGVRNPLDMIKCLVFGAKAVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCSLNCATIADLQKVDY
LLYGKLKEANDQMKKA

Sequences:

>Translated_336_residues
MTTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINAMTGGSNKGREINQKLAQVAE
TCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGLDKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRS
WQSHLADYSKQIPVPIVLKEVGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
EWKDKVELLVSGGVRNPLDMIKCLVFGAKAVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCSLNCATIADLQKVDY
LLYGKLKEANDQMKKA
>Mature_335_residues
TTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINAMTGGSNKGREINQKLAQVAET
CGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGLDKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRSW
QSHLADYSKQIPVPIVLKEVGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQE
WKDKVELLVSGGVRNPLDMIKCLVFGAKAVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCSLNCATIADLQKVDYL
LYGKLKEANDQMKKA

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_STRP2 (Q04M86)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_815862.1
- ProteinModelPortal:   Q04M86
- SMR:   Q04M86
- STRING:   Q04M86
- EnsemblBacteria:   EBSTRT00000018898
- GeneID:   4441668
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_0349
- eggNOG:   COG1304
- GeneTree:   EBGT00050000027560
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 37688; Mature: 37556

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINA
CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEE
MTGGSNKGREINQKLAQVAETCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGL
ECCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCCCEEECCCCCEEEECCCCC
DKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRSWQSHLADYSKQIPVPIVLKE
CCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHH
VGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
HCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
EWKDKVELLVSGGVRNPLDMIKCLVFGAKAVGLSRTVLELVETYTVEEVIGIVQGWKADL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCE
RLIMCSLNCATIADLQKVDYLLYGKLKEANDQMKKA
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTNRKDEHILYALEQKSSYNSFDEVELIHSSLPLYNLDEIDLSTEFAGRKWDFPFYINA
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEE
MTGGSNKGREINQKLAQVAETCGILFVTGSYSAALKNPTDDSFSVKSSHPNLLLGTNIGL
ECCCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCCCEEECCCCCEEEECCCCC
DKPVELGLQTVEEMNPVLLQVHVNVMQELLMPEGERKFRSWQSHLADYSKQIPVPIVLKE
CCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHH
VGFGMDAKTIERAYEFGVRTVDLSGRGGTSFAYIENRRSGQRDYLNQWGQSTMQALLNAQ
HCCCCCHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
EWKDKVELLVSGGVRNPLDMIKCLVFGAKAVGLSRTVLELVETYTVEEVIGIVQGWKADL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCE
RLIMCSLNCATIADLQKVDYLLYGKLKEANDQMKKA
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA