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The map label for this gene is ybdA [C]

Identifier: 116515531

GI number: 116515531

Start: 960914

End: 962125

Strand: Direct

Name: ybdA [C]

Synonym: SPD_0950

Alternate gene names: 116515531

Gene position: 960914-962125 (Clockwise)

Preceding gene: 116516041

Following gene: 116515940

Centisome position: 46.96

GC content: 30.53

Gene sequence:

>1212_bases
TTGAAAATAGATAAAAAAAACGAGGCTTTCCTTATTGTAAGTAGAGGCATATCTCGAATTGGAGATATTATGTTTGACTT
TGCGAATAATACCTTTCTTGCAGGATTAAATCCAACATCTTTATCATTGGTTGCAGTATATCAGTCACTAGAAAGTGTGA
TAGGTGTTCTTTTTAATTTATTTGGTGGAGTCATTGCAGATAGTTTCAAGCGGAAAAAAATTATTATTGTTGCAAATATC
TTATGTGGTATTGCTTGTATAATTCTTTCATTCATATCACAAGAGCAGTGGATGGTCTTTGCAATTGTCATCACTAATAT
TATCTTGGCATTTATGAGTGCTTTTTCTGGACCGTCCTATAAAGCATTTACAAAAGAAATTGTAAAAAAGGATAGTATAT
CACAACTTAATTCATTGCTAGAGATAACAAGTACTATAATTAAAGTAACAATACCAATGGTAGCAATTTTATTATATAAG
CTACTTGGGATACATGGTGTTTTACTATTGGATGGATTCTCATTTCTAATTGCTGCATCACTGATTTCCTTTATTGTACC
CGTTAATGACGAAGTGGTCACAAAGGATAAAATGACAATAGGAGGAGTTTTAAATGACTTAAAAATAGGGTTTAAGTATA
TTTATAGTCATAAGACAATATTTATGATTATTATTCTCTCTGCTTTTGTTAATTTTTTTCTAGCAGCTTATAATTTATTG
TTACCTTATAGTAATCAAATGTTTGGAGAAATTTCAGATGGGCTTTATGGTGTTTTTCTAACTGCGGAAGCAATTGGAGG
ATTTATTGGAGCGATATTAAGTGGTGTTATAAATAAAACCTTGTCAAGCAAACGTTTAATGGTCTTCTTATCATGTTCAG
GATTGATGTTAATGCTATCAACGCCACTCTATTTTTTGTTTCAAAACTTCATTATTCTAGCCTTTTCTCCGGCATTATTT
AGTCTATTTATTTCTATTTTTAATATTCAATTTTTCTCTATTGTTCAAAGAGAAGTTGATACTGAGTTTCTCGGTAGAGT
CTTTGGAATCATCTTTACGGTAGCTATTCTTTTTATGCCAGTTGGGTCTGGATTTTTCTCAGTAGTTTTAAATCCTAACA
ATACTTTTAATCTTTTTATTATTGGTGTATCTATTACGATATTATCGCTAATATTCAGCACGCTATTGAAGAGGTATGAT
AAAAATAGCTGA

Upstream 100 bases:

>100_bases
TAAATCATATTTATGAATGAACTAAGATGAGGATCATAATCATTTTTTGAAAAAATGATTATTACGATAAAAGAAAATAT
TCATAATTAAGGAGTTATTC

Downstream 100 bases:

>100_bases
TATAGAGAATTTAGAGCGCCTTTGGAATATATTTTTGGAATTTAATCAATCACAGTTGAATGTGAAGGGCAATCTGTTTT
AGAAGAATACAATCAAGATA

Product: transporter major facilitator family protein

Products: NA

Alternate protein names: Facilitator Superfamily Permease; Facilitator Superfamily Protein; Permease; Efflux Protein; Transporter SP; ABC Transporter Permease; MFS Family Transporter Protein; Transporter Protein; Non-Ribosomal Peptide Synthetase-Like Protein; Transporter Facilitator Family; Facilitator Superfamily Transporter; Multidrug ABC Transporter; ABC Transporter Membrane-Spanning Permease; Integral Membrane Efflux Protein; Amino Acid Adenylation Domain-Containing Protein; Multidrug ABC Transporter Permease; Multidrug Resistance Protein; Facilitator Superfamily Transporter Permease; Macrolide-Efflux Pump; Facilitator Family Transporter; Macrolide Efflux Protein; Drug Resistance Efflux Protein; Facilitator Superfamily MFS Protein; MFS Superfamily Transporter

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MKIDKKNEAFLIVSRGISRIGDIMFDFANNTFLAGLNPTSLSLVAVYQSLESVIGVLFNLFGGVIADSFKRKKIIIVANI
LCGIACIILSFISQEQWMVFAIVITNIILAFMSAFSGPSYKAFTKEIVKKDSISQLNSLLEITSTIIKVTIPMVAILLYK
LLGIHGVLLLDGFSFLIAASLISFIVPVNDEVVTKDKMTIGGVLNDLKIGFKYIYSHKTIFMIIILSAFVNFFLAAYNLL
LPYSNQMFGEISDGLYGVFLTAEAIGGFIGAILSGVINKTLSSKRLMVFLSCSGLMLMLSTPLYFLFQNFIILAFSPALF
SLFISIFNIQFFSIVQREVDTEFLGRVFGIIFTVAILFMPVGSGFFSVVLNPNNTFNLFIIGVSITILSLIFSTLLKRYD
KNS

Sequences:

>Translated_403_residues
MKIDKKNEAFLIVSRGISRIGDIMFDFANNTFLAGLNPTSLSLVAVYQSLESVIGVLFNLFGGVIADSFKRKKIIIVANI
LCGIACIILSFISQEQWMVFAIVITNIILAFMSAFSGPSYKAFTKEIVKKDSISQLNSLLEITSTIIKVTIPMVAILLYK
LLGIHGVLLLDGFSFLIAASLISFIVPVNDEVVTKDKMTIGGVLNDLKIGFKYIYSHKTIFMIIILSAFVNFFLAAYNLL
LPYSNQMFGEISDGLYGVFLTAEAIGGFIGAILSGVINKTLSSKRLMVFLSCSGLMLMLSTPLYFLFQNFIILAFSPALF
SLFISIFNIQFFSIVQREVDTEFLGRVFGIIFTVAILFMPVGSGFFSVVLNPNNTFNLFIIGVSITILSLIFSTLLKRYD
KNS
>Mature_403_residues
MKIDKKNEAFLIVSRGISRIGDIMFDFANNTFLAGLNPTSLSLVAVYQSLESVIGVLFNLFGGVIADSFKRKKIIIVANI
LCGIACIILSFISQEQWMVFAIVITNIILAFMSAFSGPSYKAFTKEIVKKDSISQLNSLLEITSTIIKVTIPMVAILLYK
LLGIHGVLLLDGFSFLIAASLISFIVPVNDEVVTKDKMTIGGVLNDLKIGFKYIYSHKTIFMIIILSAFVNFFLAAYNLL
LPYSNQMFGEISDGLYGVFLTAEAIGGFIGAILSGVINKTLSSKRLMVFLSCSGLMLMLSTPLYFLFQNFIILAFSPALF
SLFISIFNIQFFSIVQREVDTEFLGRVFGIIFTVAILFMPVGSGFFSVVLNPNNTFNLFIIGVSITILSLIFSTLLKRYD
KNS

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44515; Mature: 44515

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDKKNEAFLIVSRGISRIGDIMFDFANNTFLAGLNPTSLSLVAVYQSLESVIGVLFNL
CCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
FGGVIADSFKRKKIIIVANILCGIACIILSFISQEQWMVFAIVITNIILAFMSAFSGPSY
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH
KAFTKEIVKKDSISQLNSLLEITSTIIKVTIPMVAILLYKLLGIHGVLLLDGFSFLIAAS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LISFIVPVNDEVVTKDKMTIGGVLNDLKIGFKYIYSHKTIFMIIILSAFVNFFLAAYNLL
HHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LPYSNQMFGEISDGLYGVFLTAEAIGGFIGAILSGVINKTLSSKRLMVFLSCSGLMLMLS
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
TPLYFLFQNFIILAFSPALFSLFISIFNIQFFSIVQREVDTEFLGRVFGIIFTVAILFMP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSGFFSVVLNPNNTFNLFIIGVSITILSLIFSTLLKRYDKNS
CCCCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIDKKNEAFLIVSRGISRIGDIMFDFANNTFLAGLNPTSLSLVAVYQSLESVIGVLFNL
CCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
FGGVIADSFKRKKIIIVANILCGIACIILSFISQEQWMVFAIVITNIILAFMSAFSGPSY
HHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH
KAFTKEIVKKDSISQLNSLLEITSTIIKVTIPMVAILLYKLLGIHGVLLLDGFSFLIAAS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LISFIVPVNDEVVTKDKMTIGGVLNDLKIGFKYIYSHKTIFMIIILSAFVNFFLAAYNLL
HHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LPYSNQMFGEISDGLYGVFLTAEAIGGFIGAILSGVINKTLSSKRLMVFLSCSGLMLMLS
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
TPLYFLFQNFIILAFSPALFSLFISIFNIQFFSIVQREVDTEFLGRVFGIIFTVAILFMP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSGFFSVVLNPNNTFNLFIIGVSITILSLIFSTLLKRYDKNS
CCCCEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA