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The map label for this gene is sgbU [H]

Identifier: 116515477

GI number: 116515477

Start: 1829334

End: 1830197

Strand: Reverse

Name: sgbU [H]

Synonym: SPD_1843

Alternate gene names: 116515477

Gene position: 1830197-1829334 (Counterclockwise)

Preceding gene: 116516297

Following gene: 116515625

Centisome position: 89.45

GC content: 40.16

Gene sequence:

>864_bases
ATGGTACGTCCAATTGGAATTTATGAAAAGGCAACCCCAACACACTTTACTTGGCTAGAACGTTTAAATTTTGCCAAGGA
GTTAGGCTTTGATTTTGTCGAGATGTCTATTGACGAACGTGACGAGCGTTTAGCAAGACTTGACTGGAGTAAGGAAGAAC
GCTTGGAAGTTGTCAAAGCAATCTATGAAACTGGTGTTCGTATTCCTTCTATCTGTTTTTCAGGCCATCGTCGCTACCCA
TTGGGTTCAAAAGATCCAGTTCTAGAGGAAAAATCTCTAGAACTCATGAAAAAATGTATCGAATTAGCTCAAGACTTGGG
AGTTCGTACGATTCAATTAGCTGGTTACGATGTTTACTATGAGGAAAAGTCACCCCAGACACGCCAACGTTTTATCAAAA
ATTTGAGAAAAGCCTGTGACTGGGCTGAAGAAGCTCAGGTGGTACTTGCTATTGAAATTATGGATGATCCTTTCATCAAT
AGCATCGAAAAATATTTGGCTATAGAAAAAGAGATTGACTCTCCCTTCCTCTTTGTATATCCAGATATTGGTAATGTGTC
TGCATGGCATAATGATATCTATAGTGAGTTTTATCTTGGTCATCATGCCATCGCAGCTCTCCATCTCAAGGATACTTATG
CAGTGACAGAAAGTTCAAAGGGCCAGTTCCGAGATGTACCTTTCGGGCAAGGTTGTGTCAAATGGGAAGAAGCTTTCGAT
ATTTTAAAGGAAACCAATTATAATGGACCTTTCCTAATCGAAATGTGGTCTGAAAATTGTGAAACAGTAGAAGAAACACG
CGCAGCCGTTCAAGAGGCGCAAGCTTTTCTCTATCCACTCATTAAGAAAGCAGGTTTGATGTAA

Upstream 100 bases:

>100_bases
CTTTACCTTTATCGCAGGTCGTGGAATTACAGAGGCTGCGGATCCAGCAGGAGCAGCGCGTGCCTTCAAGGATGAAATCA
AACGAATTTGGGGGTAAATC

Downstream 100 bases:

>100_bases
GATGAATCAAGTAATCAATGCTATGCGTAAACGAGTCTGTGATGCCAATCAATCATTGCCAAAACATGGACTTGTCAAAT
TTACCTGGGGGAATGTATCT

Product: L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: HUMPI [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MVRPIGIYEKATPTHFTWLERLNFAKELGFDFVEMSIDERDERLARLDWSKEERLEVVKAIYETGVRIPSICFSGHRRYP
LGSKDPVLEEKSLELMKKCIELAQDLGVRTIQLAGYDVYYEEKSPQTRQRFIKNLRKACDWAEEAQVVLAIEIMDDPFIN
SIEKYLAIEKEIDSPFLFVYPDIGNVSAWHNDIYSEFYLGHHAIAALHLKDTYAVTESSKGQFRDVPFGQGCVKWEEAFD
ILKETNYNGPFLIEMWSENCETVEETRAAVQEAQAFLYPLIKKAGLM

Sequences:

>Translated_287_residues
MVRPIGIYEKATPTHFTWLERLNFAKELGFDFVEMSIDERDERLARLDWSKEERLEVVKAIYETGVRIPSICFSGHRRYP
LGSKDPVLEEKSLELMKKCIELAQDLGVRTIQLAGYDVYYEEKSPQTRQRFIKNLRKACDWAEEAQVVLAIEIMDDPFIN
SIEKYLAIEKEIDSPFLFVYPDIGNVSAWHNDIYSEFYLGHHAIAALHLKDTYAVTESSKGQFRDVPFGQGCVKWEEAFD
ILKETNYNGPFLIEMWSENCETVEETRAAVQEAQAFLYPLIKKAGLM
>Mature_287_residues
MVRPIGIYEKATPTHFTWLERLNFAKELGFDFVEMSIDERDERLARLDWSKEERLEVVKAIYETGVRIPSICFSGHRRYP
LGSKDPVLEEKSLELMKKCIELAQDLGVRTIQLAGYDVYYEEKSPQTRQRFIKNLRKACDWAEEAQVVLAIEIMDDPFIN
SIEKYLAIEKEIDSPFLFVYPDIGNVSAWHNDIYSEFYLGHHAIAALHLKDTYAVTESSKGQFRDVPFGQGCVKWEEAFD
ILKETNYNGPFLIEMWSENCETVEETRAAVQEAQAFLYPLIKKAGLM

Specific function: Isomerization of D-arabino-6-hexulose 3-phosphate to D- fructose 6-phosphate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI1790641, Length=284, Percent_Identity=51.7605633802817, Blast_Score=308, Evalue=3e-85,
Organism=Escherichia coli, GI87082294, Length=283, Percent_Identity=52.6501766784452, Blast_Score=305, Evalue=3e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.-.-.-

Molecular weight: Translated: 33286; Mature: 33286

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRPIGIYEKATPTHFTWLERLNFAKELGFDFVEMSIDERDERLARLDWSKEERLEVVKA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCHHHHHHHHHH
IYETGVRIPSICFSGHRRYPLGSKDPVLEEKSLELMKKCIELAQDLGVRTIQLAGYDVYY
HHHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE
EEKSPQTRQRFIKNLRKACDWAEEAQVVLAIEIMDDPFINSIEKYLAIEKEIDSPFLFVY
CCCCCHHHHHHHHHHHHHCCHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
PDIGNVSAWHNDIYSEFYLGHHAIAALHLKDTYAVTESSKGQFRDVPFGQGCVKWEEAFD
CCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHH
ILKETNYNGPFLIEMWSENCETVEETRAAVQEAQAFLYPLIKKAGLM
HHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVRPIGIYEKATPTHFTWLERLNFAKELGFDFVEMSIDERDERLARLDWSKEERLEVVKA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHCCCCHHHHHHHHHH
IYETGVRIPSICFSGHRRYPLGSKDPVLEEKSLELMKKCIELAQDLGVRTIQLAGYDVYY
HHHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE
EEKSPQTRQRFIKNLRKACDWAEEAQVVLAIEIMDDPFINSIEKYLAIEKEIDSPFLFVY
CCCCCHHHHHHHHHHHHHCCHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
PDIGNVSAWHNDIYSEFYLGHHAIAALHLKDTYAVTESSKGQFRDVPFGQGCVKWEEAFD
CCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHH
ILKETNYNGPFLIEMWSENCETVEETRAAVQEAQAFLYPLIKKAGLM
HHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]