Click here to switch to the map view.

The map label for this gene is ycfX [C]

Identifier: 116515474

GI number: 116515474

Start: 1504871

End: 1505755

Strand: Reverse

Name: ycfX [C]

Synonym: SPD_1488

Alternate gene names: 116515474

Gene position: 1505755-1504871 (Counterclockwise)

Preceding gene: 116516552

Following gene: 116517156

Centisome position: 73.59

GC content: 43.39

Gene sequence:

>885_bases
ATGACATACTACGTTGCAATTGATATCGGTGGAACTAACATCAAGTATGGTTTGGTTGATCAAGAGGGGCAACTTCTTGA
ATCACATGAAATGCCAACAGAGGCGCATAAGGGTGGACCTCATATCTTACAAAAGACCAAAGATATCGTAGCTAGTTATT
TAGAAAAAGGCCCAGTAGCAGGTGTTGCCATATCTTCTGCTGGGATGGTGGATCCGGATAAGGGTGAGATTTTCTATGCT
GGGCCGCAAATCCCTAACTACGCAGGCACCCAGTTCAAAAAGGAAATCGAAGAAAGCTTTACTATTCCTTGTGAGATTGA
AAATGATGTCAACTGTGCAGGTCTTGCTGAGGCAGTATCTGGTTCAGGCAAGGGAGCAAGTGTGACACTTTGCTTGACCA
TTGGAACCGGTATCGGTGGTTGCTTGATTATGGATAGGAAAGTCTTCCATGGTTTTAGTAATTCAGCCTGTGAAGTCGGG
TATATGCATATGCAGGATGGAGCTTTTCAGGATCTCGCTTCTACAACAGCTTTAGTGAAATATGTAGCTGAAGCCCATGG
AGAAGATGTTGATCAGTGGAATGGCCGACGTATCTTTAAGGAAGCTACTGAAGGAAACAAAATCTGCATGGAAGGTATTG
ACCGTATGGTTGACTATCTAGGAAAAGGTCTGGCAAATATTTGCTACGTTGCCAATCCAGAAGTGGTCATTCTTGGTGGT
GGTATCATGGGGCAAGAGGCTATCCTCAAACCTAAGATCCGCACAGCCTTGAAAGAGGCTTTGGTACCAAGTTTAGCAGA
AAAAACACGATTAGAATTTGCCCATCACCAAAATACAGCAGGGATGTTGGGTGCATATTATCATTTTAAGACAAAACAAT
CCTAG

Upstream 100 bases:

>100_bases
TGACACCAGTAATTGAAGAAGATCGTCCAGTTGTAGAAGCGGCTGCAGCCTTGATTCGTGAAACCAAGGAGCGCTTCCTC
TAATCTAAAAGGAGGTATTT

Downstream 100 bases:

>100_bases
TTTGGCTCAGCCAAACTAGGATTTTCTTACACGTTTTTGTCTACGATAGCCGTTGAGTTTTTTATTTTCCCAGTAGCTAT
TAAAGATTTTTTCCTTGCTT

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTYYVAIDIGGTNIKYGLVDQEGQLLESHEMPTEAHKGGPHILQKTKDIVASYLEKGPVAGVAISSAGMVDPDKGEIFYA
GPQIPNYAGTQFKKEIEESFTIPCEIENDVNCAGLAEAVSGSGKGASVTLCLTIGTGIGGCLIMDRKVFHGFSNSACEVG
YMHMQDGAFQDLASTTALVKYVAEAHGEDVDQWNGRRIFKEATEGNKICMEGIDRMVDYLGKGLANICYVANPEVVILGG
GIMGQEAILKPKIRTALKEALVPSLAEKTRLEFAHHQNTAGMLGAYYHFKTKQS

Sequences:

>Translated_294_residues
MTYYVAIDIGGTNIKYGLVDQEGQLLESHEMPTEAHKGGPHILQKTKDIVASYLEKGPVAGVAISSAGMVDPDKGEIFYA
GPQIPNYAGTQFKKEIEESFTIPCEIENDVNCAGLAEAVSGSGKGASVTLCLTIGTGIGGCLIMDRKVFHGFSNSACEVG
YMHMQDGAFQDLASTTALVKYVAEAHGEDVDQWNGRRIFKEATEGNKICMEGIDRMVDYLGKGLANICYVANPEVVILGG
GIMGQEAILKPKIRTALKEALVPSLAEKTRLEFAHHQNTAGMLGAYYHFKTKQS
>Mature_293_residues
TYYVAIDIGGTNIKYGLVDQEGQLLESHEMPTEAHKGGPHILQKTKDIVASYLEKGPVAGVAISSAGMVDPDKGEIFYAG
PQIPNYAGTQFKKEIEESFTIPCEIENDVNCAGLAEAVSGSGKGASVTLCLTIGTGIGGCLIMDRKVFHGFSNSACEVGY
MHMQDGAFQDLASTTALVKYVAEAHGEDVDQWNGRRIFKEATEGNKICMEGIDRMVDYLGKGLANICYVANPEVVILGGG
IMGQEAILKPKIRTALKEALVPSLAEKTRLEFAHHQNTAGMLGAYYHFKTKQS

Specific function: Unknown

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566315, Length=260, Percent_Identity=28.0769230769231, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI298566325, Length=260, Percent_Identity=28.0769230769231, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4885285, Length=260, Percent_Identity=28.0769230769231, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI190014632, Length=260, Percent_Identity=28.0769230769231, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1787363, Length=302, Percent_Identity=26.158940397351, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786891, Length=276, Percent_Identity=21.3768115942029, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081733, Length=309, Percent_Identity=21.6828478964401, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787878, Length=311, Percent_Identity=20.5787781350482, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 31616; Mature: 31485

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYYVAIDIGGTNIKYGLVDQEGQLLESHEMPTEAHKGGPHILQKTKDIVASYLEKGPVA
CEEEEEEEECCCEEEEEEECCCCCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCC
GVAISSAGMVDPDKGEIFYAGPQIPNYAGTQFKKEIEESFTIPCEIENDVNCAGLAEAVS
EEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHC
GSGKGASVTLCLTIGTGIGGCLIMDRKVFHGFSNSACEVGYMHMQDGAFQDLASTTALVK
CCCCCCEEEEEEEECCCCCEEEEECHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
YVAEAHGEDVDQWNGRRIFKEATEGNKICMEGIDRMVDYLGKGLANICYVANPEVVILGG
HHHHHCCCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHEEEECCCCEEEEEC
GIMGQEAILKPKIRTALKEALVPSLAEKTRLEFAHHQNTAGMLGAYYHFKTKQS
CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEECCCC
>Mature Secondary Structure 
TYYVAIDIGGTNIKYGLVDQEGQLLESHEMPTEAHKGGPHILQKTKDIVASYLEKGPVA
EEEEEEEECCCEEEEEEECCCCCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCC
GVAISSAGMVDPDKGEIFYAGPQIPNYAGTQFKKEIEESFTIPCEIENDVNCAGLAEAVS
EEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHC
GSGKGASVTLCLTIGTGIGGCLIMDRKVFHGFSNSACEVGYMHMQDGAFQDLASTTALVK
CCCCCCEEEEEEEECCCCCEEEEECHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
YVAEAHGEDVDQWNGRRIFKEATEGNKICMEGIDRMVDYLGKGLANICYVANPEVVILGG
HHHHHCCCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHEEEECCCCEEEEEC
GIMGQEAILKPKIRTALKEALVPSLAEKTRLEFAHHQNTAGMLGAYYHFKTKQS
CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]