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The map label for this gene is yvoA [H]

Identifier: 116515468

GI number: 116515468

Start: 1301841

End: 1302539

Strand: Direct

Name: yvoA [H]

Synonym: SPD_1275

Alternate gene names: 116515468

Gene position: 1301841-1302539 (Clockwise)

Preceding gene: 116516582

Following gene: 116515511

Centisome position: 63.63

GC content: 41.77

Gene sequence:

>699_bases
ATGCTACCTGCTTATATGAAAATCCATGATCAGATAAAAAAGGATATTGACGAGCACCGTTGGGCTATTGGTGAGAGGCT
TCCCAGTGAAAGAGATTTAGCTGAGCAGTTTGCGGTCAGTCGCATGACCCTCCGCCAAGCCGTATCTCTATTAGTCGAAG
AAGGCGTCTTAGAGCGCCGTGTAGGAAGCGGCACCTTTGTTTCCAGTACTCGAGTACAAGAAAAGATGCGAGGGACAACC
AGTTTTACTGAAATTGTCAAATCCCAAGGTAAAGTTCCCTCTAGCCAGCTCATTTCCTACAAAAAAACCATTCCCAATGA
GCAAGAAGTTGCCAAGCTAGGAATTTTTCCAACGGACAATATTATCCGAATGGAGCGGGTCCGCTATGCCGACCAAGTTC
CCCTAGTTTATGAAGTTGCTTCTATTCCTGAAAAATTCATTAAGGACTTTAAAAAAGAAGAAATCACCAGTCATTTCTTC
CAAACCTTGCAAAAACATGGCTATCGTATCGGTAAATCCCAACAGACCATCTATGCTCGCCTTGCTAAAGAAAAGATTGC
CCACTATTTGGAAGTTGAAAAAGGACATGCTATTCTTGGATTGACCCAGATTTCCTACCTAGAAGATGGTACTGCTTTTG
AATACGTAAAAAGTCAATATGTAGGCGAACGCTTTGAATTTTATCTTGAAAATAATTAG

Upstream 100 bases:

>100_bases
ATCACAAATAAGGGCGAATTACCAACTAAACAAGGCGAAGTTTGACTTTTTCTAGTTTATTGGGGTGCAATAGAGAAAAG
ATAGAAATGAAGTGAAAAAT

Downstream 100 bases:

>100_bases
ATTACCACGCAAAAACTCTCTGTCACGGACAAAGAGTCTTTTTTATTTTTCTAAGAATAAATCTTTCAAAGAAATCAAAG
TTACAGCAAACAATATCATT

Product: transcriptional regulator, GntR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLPAYMKIHDQIKKDIDEHRWAIGERLPSERDLAEQFAVSRMTLRQAVSLLVEEGVLERRVGSGTFVSSTRVQEKMRGTT
SFTEIVKSQGKVPSSQLISYKKTIPNEQEVAKLGIFPTDNIIRMERVRYADQVPLVYEVASIPEKFIKDFKKEEITSHFF
QTLQKHGYRIGKSQQTIYARLAKEKIAHYLEVEKGHAILGLTQISYLEDGTAFEYVKSQYVGERFEFYLENN

Sequences:

>Translated_232_residues
MLPAYMKIHDQIKKDIDEHRWAIGERLPSERDLAEQFAVSRMTLRQAVSLLVEEGVLERRVGSGTFVSSTRVQEKMRGTT
SFTEIVKSQGKVPSSQLISYKKTIPNEQEVAKLGIFPTDNIIRMERVRYADQVPLVYEVASIPEKFIKDFKKEEITSHFF
QTLQKHGYRIGKSQQTIYARLAKEKIAHYLEVEKGHAILGLTQISYLEDGTAFEYVKSQYVGERFEFYLENN
>Mature_232_residues
MLPAYMKIHDQIKKDIDEHRWAIGERLPSERDLAEQFAVSRMTLRQAVSLLVEEGVLERRVGSGTFVSSTRVQEKMRGTT
SFTEIVKSQGKVPSSQLISYKKTIPNEQEVAKLGIFPTDNIIRMERVRYADQVPLVYEVASIPEKFIKDFKKEEITSHFF
QTLQKHGYRIGKSQQTIYARLAKEKIAHYLEVEKGHAILGLTQISYLEDGTAFEYVKSQYVGERFEFYLENN

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=213, Percent_Identity=30.5164319248826, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1786950, Length=230, Percent_Identity=30, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082252, Length=206, Percent_Identity=29.126213592233, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788418, Length=230, Percent_Identity=24.7826086956522, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790540, Length=242, Percent_Identity=26.8595041322314, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26844; Mature: 26844

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAYMKIHDQIKKDIDEHRWAIGERLPSERDLAEQFAVSRMTLRQAVSLLVEEGVLERR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSGTFVSSTRVQEKMRGTTSFTEIVKSQGKVPSSQLISYKKTIPNEQEVAKLGIFPTDN
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCC
IIRMERVRYADQVPLVYEVASIPEKFIKDFKKEEITSHFFQTLQKHGYRIGKSQQTIYAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LAKEKIAHYLEVEKGHAILGLTQISYLEDGTAFEYVKSQYVGERFEFYLENN
HHHHHHHHHHHHCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MLPAYMKIHDQIKKDIDEHRWAIGERLPSERDLAEQFAVSRMTLRQAVSLLVEEGVLERR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSGTFVSSTRVQEKMRGTTSFTEIVKSQGKVPSSQLISYKKTIPNEQEVAKLGIFPTDN
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCC
IIRMERVRYADQVPLVYEVASIPEKFIKDFKKEEITSHFFQTLQKHGYRIGKSQQTIYAR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LAKEKIAHYLEVEKGHAILGLTQISYLEDGTAFEYVKSQYVGERFEFYLENN
HHHHHHHHHHHHCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]