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The map label for this gene is orn [H]

Identifier: 116515288

GI number: 116515288

Start: 394175

End: 394720

Strand: Direct

Name: orn [H]

Synonym: BCc_373

Alternate gene names: 116515288

Gene position: 394175-394720 (Clockwise)

Preceding gene: 116515280

Following gene: 116515290

Centisome position: 94.67

GC content: 19.23

Gene sequence:

>546_bases
ATGAACCAAAAAAATGAAAATCTAATTTGGGTTGATTTAGAAACGACAGGATTAAACCCAAAAATCCATAAAATTATAGA
AATTTCTACCATTATTACAGATAAAAATTTAAATATTTTAGAAATCGGACCTAATATTATTATTTTTCAAAAAAAAGAAT
TTTTAAGAAAAATATGTCATAATTTTTTCCAAATACATAAAAAAAATGGATTAATGAAAGAAATTAAAAATAGTAAAGAA
GATGAAAAAAGCGCAGAAAAAAAAACACTAAAATTTTTAAAAAAGTGGATTCCAAAAAATATTTCTCCTATATGTGGAAA
TACTATTTCCTTAGATAGGAATTTTCTATTATATCATATGCCAAAATTAAAATCATATTTTTACTATAGAAACATAGATG
TAAGTTCTATTAATGAATTAATAAAACGATGGAAACCTAAAATTTTAAATAAAATTAAAAAAAAAAAAAATCATCGAACA
AAATCAGATTTAATTGAATCAATACAAGAATTAAAATTCTATAAAGAAAATATCTTTATATTATAA

Upstream 100 bases:

>100_bases
TTTTATATTTATTAAATAAAATAATTAATTTTAAATTTAAATTACTTATTTATTAAAAATAAATATCATTTAAAAATAAA
TATACTTTTAAAATATAAAA

Downstream 100 bases:

>100_bases
ATAATATTTTATTAATTAAATAATAACAAATACTATTAAAATATTTCTTGCAAAAAAAAAAAAATTTTTATATAATTAAA
ATAATAGTTTATTGCGGGAA

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNQKNENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKICHNFFQIHKKNGLMKEIKNSKE
DEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHMPKLKSYFYYRNIDVSSINELIKRWKPKILNKIKKKKNHRT
KSDLIESIQELKFYKENIFIL

Sequences:

>Translated_181_residues
MNQKNENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKICHNFFQIHKKNGLMKEIKNSKE
DEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHMPKLKSYFYYRNIDVSSINELIKRWKPKILNKIKKKKNHRT
KSDLIESIQELKFYKENIFIL
>Mature_181_residues
MNQKNENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKICHNFFQIHKKNGLMKEIKNSKE
DEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHMPKLKSYFYYRNIDVSSINELIKRWKPKILNKIKKKKNHRT
KSDLIESIQELKFYKENIFIL

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=175, Percent_Identity=41.1428571428571, Blast_Score=143, Evalue=7e-35,
Organism=Escherichia coli, GI87082382, Length=177, Percent_Identity=46.3276836158192, Blast_Score=186, Evalue=9e-49,
Organism=Caenorhabditis elegans, GI17557752, Length=175, Percent_Identity=41.7142857142857, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6323088, Length=179, Percent_Identity=31.8435754189944, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21355135, Length=176, Percent_Identity=39.2045454545455, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 21685; Mature: 21685

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKNENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKICH
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHEEECCCCEEEEECCCEEEECCHHHHHHHHH
NFFQIHKKNGLMKEIKNSKEDEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHM
HHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEC
PKLKSYFYYRNIDVSSINELIKRWKPKILNKIKKKKNHRTKSDLIESIQELKFYKENIFI
HHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEC
L
C
>Mature Secondary Structure
MNQKNENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILEIGPNIIIFQKKEFLRKICH
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHEEECCCCEEEEECCCEEEECCHHHHHHHHH
NFFQIHKKNGLMKEIKNSKEDEKSAEKKTLKFLKKWIPKNISPICGNTISLDRNFLLYHM
HHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEC
PKLKSYFYYRNIDVSSINELIKRWKPKILNKIKKKKNHRTKSDLIESIQELKFYKENIFI
HHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA