Definition Buchnera aphidicola str. Cc (Cinara cedri), complete genome.
Accession NC_008513
Length 416,380

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The map label for this gene is ygfZ [C]

Identifier: 116515194

GI number: 116515194

Start: 300651

End: 301625

Strand: Reverse

Name: ygfZ [C]

Synonym: BCc_268

Alternate gene names: 116515194

Gene position: 301625-300651 (Counterclockwise)

Preceding gene: 116515203

Following gene: 116515192

Centisome position: 72.44

GC content: 15.28

Gene sequence:

>975_bases
ATGAAAAATAATGTTTTAAATAATAATAAAATTTATTTAAGTAAAAATTTATCTAGTACTTTTATAGAATTAGATCAATG
GTCTATTATACGAGTAAAAGGAAAAGACAAAAGAAATTATTTAAATAATCAATTTACAATAAATATAAATACAATTAATA
AAAATAAATATAAAATAGGCGCGCATTGTAATATTAATGGAAAAGTTTTAGCTATTTTTTTTATATTTAAATATAAAGAT
TCTTTTTTTTATATTATTAATAATTCAGTATGCGATAAACATTTAATAGAATTAAAAAAATATTCTTTATTTTATAAAAT
AAAAATTTTTAAAGAAAAAAAATTTCATTTATTTGGATTATGTGGATCTAATTCTTATTATTTATTGAAAAATTTTTTTT
TTATACATTTTAAAAAAAAAAATATGGTTACAAAAATTAAAAATATTATTTTTCTAAAAATTAATTATCCAGTGAAAAGA
TTTTTAATCTTAACAAAAGGAAATATGTTACATAATTTTTTAAATGATAATAAAAAAAAAATATTATTTAGTAATAATAA
ACAGTGGATATCTTTAGATATTGAATCTAGTTTTCCTATAGTCAATAAAACAATATCTGGTAGATTTATATTACAAACAT
TAGATTTAAAAAAATGGAATGCAATTAGTTTTACAAAAGGGTGTTATTATGGACAAGAAATGTTATGTAAATATGAAAAC
AAAAAAATTAACAAATTTATTATATGTGCATTAATAGGAAGAATTGGTAATACTATTCCTATTAATAATGAAAATGTTAA
ATATAAAGATAAAGAAGGAAATAAATATATTTCTGGAATAATATTATCTTGGGTAAAAGTTTATAAAAATAAAATTTTAT
TACAAGTACGTATGAAAGAAAAATTTTTTAATAAAAAAAATAATTTTTATTTATCATCAAACAAAGAAAATTTTTATAAA
ATATATATTATATAA

Upstream 100 bases:

>100_bases
AAATATATTTTATAAAATATTATTATATAATATAAATATATTTATAATATAAATATATTATAAAATTTTTTTAGATTTTT
ATTAAATAGGTTAATTTTAT

Downstream 100 bases:

>100_bases
AATATAAAAATATTTTTATAAAAATTTTATTAATATGCTTAAATTATGAAAAAGAATCTTTTATTTGTATATAAAGATTC
TCTTTTATAAATTATTTTAA

Product: YgfZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIGAHCNINGKVLAIFFIFKYKD
SFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGLCGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKR
FLILTKGNMLHNFLNDNKKKILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN
KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKEKFFNKKNNFYLSSNKENFYK
IYII

Sequences:

>Translated_324_residues
MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIGAHCNINGKVLAIFFIFKYKD
SFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGLCGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKR
FLILTKGNMLHNFLNDNKKKILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN
KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKEKFFNKKNNFYLSSNKENFYK
IYII
>Mature_324_residues
MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIGAHCNINGKVLAIFFIFKYKD
SFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGLCGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKR
FLILTKGNMLHNFLNDNKKKILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN
KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKEKFFNKKNNFYLSSNKENFYK
IYII

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=275, Percent_Identity=32, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 38663; Mature: 38663

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIG
CCCCEECCCEEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEE
AHCNINGKVLAIFFIFKYKDSFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGL
EEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHEEEEEEEEEEECCCEEEEEE
CGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKRFLILTKGNMLHNFLNDNKKK
ECCCCEEEEEEEEEEEEECCCHHEEECEEEEEEECCCCEEEEEEECCCHHHHHHCCCCEE
ILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN
EEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEECCCCCCHHHHEEECC
KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKE
CCCCCEEEEEEHHHCCCEECCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEHH
KFFNKKNNFYLSSNKENFYKIYII
HHCCCCCCEEEECCCCCEEEEEEC
>Mature Secondary Structure
MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIG
CCCCEECCCEEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEE
AHCNINGKVLAIFFIFKYKDSFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGL
EEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHEEEEEEEEEEECCCEEEEEE
CGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKRFLILTKGNMLHNFLNDNKKK
ECCCCEEEEEEEEEEEEECCCHHEEECEEEEEEECCCCEEEEEEECCCHHHHHHCCCCEE
ILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN
EEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEECCCCCCHHHHEEECC
KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKE
CCCCCEEEEEEHHHCCCEECCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEHH
KFFNKKNNFYLSSNKENFYKIYII
HHCCCCCCEEEECCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA