Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is ygfZ [C]
Identifier: 116515194
GI number: 116515194
Start: 300651
End: 301625
Strand: Reverse
Name: ygfZ [C]
Synonym: BCc_268
Alternate gene names: 116515194
Gene position: 301625-300651 (Counterclockwise)
Preceding gene: 116515203
Following gene: 116515192
Centisome position: 72.44
GC content: 15.28
Gene sequence:
>975_bases ATGAAAAATAATGTTTTAAATAATAATAAAATTTATTTAAGTAAAAATTTATCTAGTACTTTTATAGAATTAGATCAATG GTCTATTATACGAGTAAAAGGAAAAGACAAAAGAAATTATTTAAATAATCAATTTACAATAAATATAAATACAATTAATA AAAATAAATATAAAATAGGCGCGCATTGTAATATTAATGGAAAAGTTTTAGCTATTTTTTTTATATTTAAATATAAAGAT TCTTTTTTTTATATTATTAATAATTCAGTATGCGATAAACATTTAATAGAATTAAAAAAATATTCTTTATTTTATAAAAT AAAAATTTTTAAAGAAAAAAAATTTCATTTATTTGGATTATGTGGATCTAATTCTTATTATTTATTGAAAAATTTTTTTT TTATACATTTTAAAAAAAAAAATATGGTTACAAAAATTAAAAATATTATTTTTCTAAAAATTAATTATCCAGTGAAAAGA TTTTTAATCTTAACAAAAGGAAATATGTTACATAATTTTTTAAATGATAATAAAAAAAAAATATTATTTAGTAATAATAA ACAGTGGATATCTTTAGATATTGAATCTAGTTTTCCTATAGTCAATAAAACAATATCTGGTAGATTTATATTACAAACAT TAGATTTAAAAAAATGGAATGCAATTAGTTTTACAAAAGGGTGTTATTATGGACAAGAAATGTTATGTAAATATGAAAAC AAAAAAATTAACAAATTTATTATATGTGCATTAATAGGAAGAATTGGTAATACTATTCCTATTAATAATGAAAATGTTAA ATATAAAGATAAAGAAGGAAATAAATATATTTCTGGAATAATATTATCTTGGGTAAAAGTTTATAAAAATAAAATTTTAT TACAAGTACGTATGAAAGAAAAATTTTTTAATAAAAAAAATAATTTTTATTTATCATCAAACAAAGAAAATTTTTATAAA ATATATATTATATAA
Upstream 100 bases:
>100_bases AAATATATTTTATAAAATATTATTATATAATATAAATATATTTATAATATAAATATATTATAAAATTTTTTTAGATTTTT ATTAAATAGGTTAATTTTAT
Downstream 100 bases:
>100_bases AATATAAAAATATTTTTATAAAAATTTTATTAATATGCTTAAATTATGAAAAAGAATCTTTTATTTGTATATAAAGATTC TCTTTTATAAATTATTTTAA
Product: YgfZ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIGAHCNINGKVLAIFFIFKYKD SFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGLCGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKR FLILTKGNMLHNFLNDNKKKILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKEKFFNKKNNFYLSSNKENFYK IYII
Sequences:
>Translated_324_residues MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIGAHCNINGKVLAIFFIFKYKD SFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGLCGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKR FLILTKGNMLHNFLNDNKKKILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKEKFFNKKNNFYLSSNKENFYK IYII >Mature_324_residues MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIGAHCNINGKVLAIFFIFKYKD SFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGLCGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKR FLILTKGNMLHNFLNDNKKKILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKEKFFNKKNNFYLSSNKENFYK IYII
Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]
COG id: COG0354
COG function: function code R; Predicted aminomethyltransferase related to GcvT
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA-modifying ygfZ family [H]
Homologues:
Organism=Escherichia coli, GI1789265, Length=275, Percent_Identity=32, Blast_Score=172, Evalue=2e-44,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017703 - InterPro: IPR006222 [H]
Pfam domain/function: PF01571 GCV_T [H]
EC number: NA
Molecular weight: Translated: 38663; Mature: 38663
Theoretical pI: Translated: 10.59; Mature: 10.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIG CCCCEECCCEEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEE AHCNINGKVLAIFFIFKYKDSFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGL EEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHEEEEEEEEEEECCCEEEEEE CGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKRFLILTKGNMLHNFLNDNKKK ECCCCEEEEEEEEEEEEECCCHHEEECEEEEEEECCCCEEEEEEECCCHHHHHHCCCCEE ILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN EEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEECCCCCCHHHHEEECC KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKE CCCCCEEEEEEHHHCCCEECCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEHH KFFNKKNNFYLSSNKENFYKIYII HHCCCCCCEEEECCCCCEEEEEEC >Mature Secondary Structure MKNNVLNNNKIYLSKNLSSTFIELDQWSIIRVKGKDKRNYLNNQFTININTINKNKYKIG CCCCEECCCEEEEECCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEE AHCNINGKVLAIFFIFKYKDSFFYIINNSVCDKHLIELKKYSLFYKIKIFKEKKFHLFGL EEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHEEEEEEEEEEECCCEEEEEE CGSNSYYLLKNFFFIHFKKKNMVTKIKNIIFLKINYPVKRFLILTKGNMLHNFLNDNKKK ECCCCEEEEEEEEEEEEECCCHHEEECEEEEEEECCCCEEEEEEECCCHHHHHHCCCCEE ILFSNNKQWISLDIESSFPIVNKTISGRFILQTLDLKKWNAISFTKGCYYGQEMLCKYEN EEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEECCCCCCHHHHEEECC KKINKFIICALIGRIGNTIPINNENVKYKDKEGNKYISGIILSWVKVYKNKILLQVRMKE CCCCCEEEEEEHHHCCCEECCCCCCEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEHH KFFNKKNNFYLSSNKENFYKIYII HHCCCCCCEEEECCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA