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The map label for this gene is fis [H]

Identifier: 116515183

GI number: 116515183

Start: 285441

End: 285767

Strand: Reverse

Name: fis [H]

Synonym: BCc_252

Alternate gene names: 116515183

Gene position: 285767-285441 (Counterclockwise)

Preceding gene: 116515187

Following gene: 116515175

Centisome position: 68.63

GC content: 15.29

Gene sequence:

>327_bases
ATGTTTAAAAAAAATAAAAATAATAGTCAATTTATTGTATCAAAAATCATTAATCAAGAAAAATTTGCGTTTTCTTTAGA
AGATTGTGTTAAATTAGCATTAAAAAATTATTTTTTTAAATTAATAGATAAAAACGAAAATAATTTATATAAAATATTTT
TATCTAAAATTGAAAAACCATTATTTGATAGTGTTATGCAATTTACTAGAGGAAATCAAACTCAAGCAGCTATAATATTA
GGAATTAATAGAGGTACATTAAGAAAAAAATTAAATATTTATTATAAAAATAATATCTTTAAAAAATCAAAAAATTTTAA
TATATAA

Upstream 100 bases:

>100_bases
TTCAGAAGATATGAATTAATTTTAAAAAAAATGTTTTATAAAAAATTTTTATATAATGTTTTTTATTATTTTAATAATAT
AAATTTATTTAAGTGTATAT

Downstream 100 bases:

>100_bases
ATATTATATATATTGTTTTTTATAAAAAATAAAAATTAATTATTTTTCTTTTTCTAATAAAAATTTTACTGCAGTCTTTA
ATGCTATTTGATATCCGTAA

Product: DNA-bending protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MFKKNKNNSQFIVSKIINQEKFAFSLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEKPLFDSVMQFTRGNQTQAAIIL
GINRGTLRKKLNIYYKNNIFKKSKNFNI

Sequences:

>Translated_108_residues
MFKKNKNNSQFIVSKIINQEKFAFSLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEKPLFDSVMQFTRGNQTQAAIIL
GINRGTLRKKLNIYYKNNIFKKSKNFNI
>Mature_108_residues
MFKKNKNNSQFIVSKIINQEKFAFSLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEKPLFDSVMQFTRGNQTQAAIIL
GINRGTLRKKLNIYYKNNIFKKSKNFNI

Specific function: Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters [H]

COG id: COG2901

COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory fis family [H]

Homologues:

Organism=Escherichia coli, GI1789661, Length=98, Percent_Identity=50, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005412
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 12810; Mature: 12810

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKNKNNSQFIVSKIINQEKFAFSLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEKP
CCCCCCCCCHHHHHHHHCHHHHEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH
LFDSVMQFTRGNQTQAAIILGINRGTLRKKLNIYYKNNIFKKSKNFNI
HHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEEEECCCEECCCCCCCC
>Mature Secondary Structure
MFKKNKNNSQFIVSKIINQEKFAFSLEDCVKLALKNYFFKLIDKNENNLYKIFLSKIEKP
CCCCCCCCCHHHHHHHHCHHHHEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH
LFDSVMQFTRGNQTQAAIILGINRGTLRKKLNIYYKNNIFKKSKNFNI
HHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEEEECCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA