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The map label for this gene is fabD [H]

Identifier: 116515149

GI number: 116515149

Start: 248975

End: 249913

Strand: Direct

Name: fabD [H]

Synonym: BCc_216

Alternate gene names: 116515149

Gene position: 248975-249913 (Clockwise)

Preceding gene: 116515148

Following gene: 116515150

Centisome position: 59.8

GC content: 16.93

Gene sequence:

>939_bases
ATGAAAAAATATTCAGTAATTTTTCCAGGAAATGGTTTACATAATATGGAATTTTTAAAATTTTTTTTTAAAAAATATAA
TATTATTCAAGAAATATTTAATGAAGCATCTGATATATTACATATAAATATATATAAAAAATTTTTTCAAAATAAAAATT
ATTTAATTAATTATAAAGATATATATCAATTAATATTTATTTCTTCTATTTCCATATATAAATTATTAAAACAAAAAATA
TATTTAAATCCATATATAATGGGTGGACACAGTTTAGGAACATATTCAGCTTTAGTTTGTAATAAAAATATCTTATTTAA
AGATTCTCTTAGAATCATTCAAATACGTAACAAAATATTATTATTATCAGCAAAGAATAATCGATTATTAACTCTGGTTA
TTATTGGTTTAAATTATACAATCATAAAAAATATATGTATATTAGTATCAACAAAAAAAAATAAAGCATTTATATCAGCA
ATTAATTCAAATACACAAATTACCATAACTGGAAATTATTCTACTGTGTATACAGTAGGAAAAATTTGTAAAAAACAATT
TTTAGTAAAAATTATTCGATTACCAATGGTTTTTAGTTCTCATTGTGAACTTTTAAAAAAATATAAAAAAAGATTTTCTT
ATTATTTAAAAAAAATAAAAATTTTTGAAAGAAAACGTCCAATTATTAGTAATAATGATTCTAAACTATTATATTCAAAA
AAAGATATATTTAATTCTTTATTAAAACAAATATATACTAAAATTCAATGGAATGACAATATTAAAAAAATAATTTCTAT
AGGTATAAAAATCTTCATTGAAATAGGACCTGGGCAAATATTAAGTAATTTAAATAAAGAACACAAAAAAATTTTGTCAT
ATCCTACTAATAGTAATAAAAAATTATTATTAGTAAAAAATATAATAAAAAAACTATGA

Upstream 100 bases:

>100_bases
TTAAATATTTTTTAAATTAATATTCTAATTAATAATTAAAATATAAAAAATTTATATTTATTATTATAAATAATATATAT
AATTAAAATTTAAATATTAT

Downstream 100 bases:

>100_bases
AAAAAAAAATTGCTTTAATTACAGGAGCTAGTGGAGGAATAGGAAAAAGTATTTCTAAAGAACTAATAAGAAAAGGAATA
TATGTAATAGGAACTACTAC

Product: hypothetical protein

Products: NA

Alternate protein names: MCT [H]

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKKYSVIFPGNGLHNMEFLKFFFKKYNIIQEIFNEASDILHINIYKKFFQNKNYLINYKDIYQLIFISSISIYKLLKQKI
YLNPYIMGGHSLGTYSALVCNKNILFKDSLRIIQIRNKILLLSAKNNRLLTLVIIGLNYTIIKNICILVSTKKNKAFISA
INSNTQITITGNYSTVYTVGKICKKQFLVKIIRLPMVFSSHCELLKKYKKRFSYYLKKIKIFERKRPIISNNDSKLLYSK
KDIFNSLLKQIYTKIQWNDNIKKIISIGIKIFIEIGPGQILSNLNKEHKKILSYPTNSNKKLLLVKNIIKKL

Sequences:

>Translated_312_residues
MKKYSVIFPGNGLHNMEFLKFFFKKYNIIQEIFNEASDILHINIYKKFFQNKNYLINYKDIYQLIFISSISIYKLLKQKI
YLNPYIMGGHSLGTYSALVCNKNILFKDSLRIIQIRNKILLLSAKNNRLLTLVIIGLNYTIIKNICILVSTKKNKAFISA
INSNTQITITGNYSTVYTVGKICKKQFLVKIIRLPMVFSSHCELLKKYKKRFSYYLKKIKIFERKRPIISNNDSKLLYSK
KDIFNSLLKQIYTKIQWNDNIKKIISIGIKIFIEIGPGQILSNLNKEHKKILSYPTNSNKKLLLVKNIIKKL
>Mature_312_residues
MKKYSVIFPGNGLHNMEFLKFFFKKYNIIQEIFNEASDILHINIYKKFFQNKNYLINYKDIYQLIFISSISIYKLLKQKI
YLNPYIMGGHSLGTYSALVCNKNILFKDSLRIIQIRNKILLLSAKNNRLLTLVIIGLNYTIIKNICILVSTKKNKAFISA
INSNTQITITGNYSTVYTVGKICKKQFLVKIIRLPMVFSSHCELLKKYKKRFSYYLKKIKIFERKRPIISNNDSKLLYSK
KDIFNSLLKQIYTKIQWNDNIKKIISIGIKIFIEIGPGQILSNLNKEHKKILSYPTNSNKKLLLVKNIIKKL

Specific function: Fatty acid biosynthesis. [C]

COG id: COG0331

COG function: function code I; (acyl-carrier-protein) S-malonyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fabD family [H]

Homologues:

Organism=Escherichia coli, GI1787334, Length=289, Percent_Identity=28.719723183391, Blast_Score=157, Evalue=7e-40,

Paralogues:

None

Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001227
- InterPro:   IPR014043
- InterPro:   IPR016035
- InterPro:   IPR004410
- InterPro:   IPR016036 [H]

Pfam domain/function: PF00698 Acyl_transf_1 [H]

EC number: =2.3.1.39 [H]

Molecular weight: Translated: 36593; Mature: 36593

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYSVIFPGNGLHNMEFLKFFFKKYNIIQEIFNEASDILHINIYKKFFQNKNYLINYKD
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHCCCCEEEEHHH
IYQLIFISSISIYKLLKQKIYLNPYIMGGHSLGTYSALVCNKNILFKDSLRIIQIRNKIL
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECCCEEEECCEEEEEEECEEE
LLSAKNNRLLTLVIIGLNYTIIKNICILVSTKKNKAFISAINSNTQITITGNYSTVYTVG
EEEECCCCEEEEEEECCCHHHHCCEEEEEEECCCCEEEEEECCCEEEEEEECCHHHHHHH
KICKKQFLVKIIRLPMVFSSHCELLKKYKKRFSYYLKKIKIFERKRPIISNNDSKLLYSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEH
KDIFNSLLKQIYTKIQWNDNIKKIISIGIKIFIEIGPGQILSNLNKEHKKILSYPTNSNK
HHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEEEECCHHHHHHCCHHHHHHHCCCCCCCC
KLLLVKNIIKKL
EEEEHHHHHHHC
>Mature Secondary Structure
MKKYSVIFPGNGLHNMEFLKFFFKKYNIIQEIFNEASDILHINIYKKFFQNKNYLINYKD
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHCCCCEEEEHHH
IYQLIFISSISIYKLLKQKIYLNPYIMGGHSLGTYSALVCNKNILFKDSLRIIQIRNKIL
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECCCEEEECCEEEEEEECEEE
LLSAKNNRLLTLVIIGLNYTIIKNICILVSTKKNKAFISAINSNTQITITGNYSTVYTVG
EEEECCCCEEEEEEECCCHHHHCCEEEEEEECCCCEEEEEECCCEEEEEEECCHHHHHHH
KICKKQFLVKIIRLPMVFSSHCELLKKYKKRFSYYLKKIKIFERKRPIISNNDSKLLYSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEH
KDIFNSLLKQIYTKIQWNDNIKKIISIGIKIFIEIGPGQILSNLNKEHKKILSYPTNSNK
HHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEEEECCHHHHHHCCHHHHHHHCCCCCCCC
KLLLVKNIIKKL
EEEEHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]