Click here to switch to the map view.

The map label for this gene is tadA [H]

Identifier: 116515096

GI number: 116515096

Start: 187494

End: 187955

Strand: Direct

Name: tadA [H]

Synonym: BCc_160

Alternate gene names: 116515096

Gene position: 187494-187955 (Clockwise)

Preceding gene: 116515095

Following gene: 116515102

Centisome position: 45.03

GC content: 20.78

Gene sequence:

>462_bases
ATGCTATCTATAGATAATTATTGGATGAAATATGCTTTAAAACAAGCATATTTAGGAAAAAAAAATGGTGAAGTTCCTAT
AGGTTCATTATTAATTAAAAACAATAATCTTATTAGTTCAGCATGGAATTCTTGTATTAATTTATTTGATGCTAGTGCTC
ATGCAGAAATATTAGTTATTAGAAATGGAGGAAAAATACTTAAAAATTATCGATTAAAAAATACAATTTTATATGTTACT
CATGAACCATGTTTTATGTGTTCCGAAGCTATTATTAATGCTAGAATTAATAAAGTTGTATATGGTTCTTATAGTTTTAA
AAAAAACTGTTTTTCTTATTATATAAATTTTTTATATATTAATAATATTAAGCATCATATAAAAGAAATAAAATCAGGTA
TCCTATTATATGAATGCTCAAATTTATTAAAAAATTTTTTTAGAAGAAAAAGATATACATAA

Upstream 100 bases:

>100_bases
TAATTCTTGGAAAATAGAAAGAGATACAATTTTTAAAAGAATATTAATTAAATAAATTAAATTAAATAGTATTATATGTA
CTTATTAGGATTATATTAAT

Downstream 100 bases:

>100_bases
GAAAATTTTTTTGTATTATTTTTCTAAAATAGCTATTGCATATGTATGTTTATTTGAATCTGTTACACTCAAAAAAATTT
TTTTAACTTGTGATTTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MLSIDNYWMKYALKQAYLGKKNGEVPIGSLLIKNNNLISSAWNSCINLFDASAHAEILVIRNGGKILKNYRLKNTILYVT
HEPCFMCSEAIINARINKVVYGSYSFKKNCFSYYINFLYINNIKHHIKEIKSGILLYECSNLLKNFFRRKRYT

Sequences:

>Translated_153_residues
MLSIDNYWMKYALKQAYLGKKNGEVPIGSLLIKNNNLISSAWNSCINLFDASAHAEILVIRNGGKILKNYRLKNTILYVT
HEPCFMCSEAIINARINKVVYGSYSFKKNCFSYYINFLYINNIKHHIKEIKSGILLYECSNLLKNFFRRKRYT
>Mature_153_residues
MLSIDNYWMKYALKQAYLGKKNGEVPIGSLLIKNNNLISSAWNSCINLFDASAHAEILVIRNGGKILKNYRLKNTILYVT
HEPCFMCSEAIINARINKVVYGSYSFKKNCFSYYINFLYINNIKHHIKEIKSGILLYECSNLLKNFFRRKRYT

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI124107608, Length=152, Percent_Identity=30.9210526315789, Blast_Score=67, Evalue=7e-12,
Organism=Escherichia coli, GI145693172, Length=146, Percent_Identity=42.4657534246575, Blast_Score=140, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17554608, Length=99, Percent_Identity=34.3434343434343, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 17865; Mature: 17865

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIDNYWMKYALKQAYLGKKNGEVPIGSLLIKNNNLISSAWNSCINLFDASAHAEILVI
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEE
RNGGKILKNYRLKNTILYVTHEPCFMCSEAIINARINKVVYGSYSFKKNCFSYYINFLYI
ECCCHHHHCEEECCEEEEEECCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHEE
NNIKHHIKEIKSGILLYECSNLLKNFFRRKRYT
HHHHHHHHHHHCCEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSIDNYWMKYALKQAYLGKKNGEVPIGSLLIKNNNLISSAWNSCINLFDASAHAEILVI
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEE
RNGGKILKNYRLKNTILYVTHEPCFMCSEAIINARINKVVYGSYSFKKNCFSYYINFLYI
ECCCHHHHCEEECCEEEEEECCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHEE
NNIKHHIKEIKSGILLYECSNLLKNFFRRKRYT
HHHHHHHHHHHCCEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]