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The map label for this gene is ychF [H]

Identifier: 116515064

GI number: 116515064

Start: 140205

End: 141248

Strand: Direct

Name: ychF [H]

Synonym: BCc_124

Alternate gene names: 116515064

Gene position: 140205-141248 (Clockwise)

Preceding gene: 116515063

Following gene: 116515069

Centisome position: 33.67

GC content: 19.06

Gene sequence:

>1044_bases
GTGGTATATAAATTTGGTATTATCGGATTACCTAATGTAGGAAAATCAGCTTTATTCAATAAAATAACAAAATTAAATGT
TCCGTCAAAAAATTTTCCATTTTGTACAATTAAACCAAATATTGGTATTATATCAATTTTTGATAATCGGTTAATAAATA
TTTCTAATAATTTATCTTCTAAAAATATTATATATAGTTGTGTTAAAATTATTGATATTGCAGGTTTAGTAAAAGGAGCT
TCTTTAGGTGAAGGTTTAGGAAATAAGTTTTTGGAAAATATAAGAGATTGTCATGCTATTATTCATGTAGTTCGTTGTTT
TAAAAACAATAATATTATTCATATATATAATGATATTAATCCTATACGAGATATTGATATTATTAATACAGAATTATTGT
TTTCAGATCTTAATTTATGTGAAAAAATTTTTAAAAAAAAATCAATTAATAATAAAATTAAAAATTCTAATCAGTATGTT
TTTTTAAATTTAATAAAATATTGTATAAAAAAATTACAACAAGGTTATATTTTAAGAGATTTAAATTTTACTCAAAATGA
ATTAAAAATTTTAAAACAATATAGATTTTTAACTTTAAAACCAATGATTTATGTTTTTAATATTTCTAATGATATTACTC
ATAATATTAATTTAAATATTTTTTTAAAAAATAATAATTTTATTAAATCTAATTTTATTTCAATTTCTATAGAAAATTTA
GATACATCTAAAATTTATCATGTATATTATAATAAAATAATTCGGAAATTATGTTCGATGCTAGATCTCTGTACTTTTTT
TACAGCTGGATCTAAAGAAGCTAGATCATGGATTTTTAAGAAAGAAAGTACAGCAAAACAAGTTGCAAAATTAATTCATA
CAGATTTTTTTAGAGGATTTATTAGGGCTCAGGTAATTTCATATGATGAATTTATTAAATATGGTAATTTAAATATAATT
AGAAAATTAGGGAGGATTCGTAGTGAAGGAAAAAATTATATTGTAAAAGATGGAGATATAATAAATTTTTTATTTAACAT
ATAA

Upstream 100 bases:

>100_bases
TATAAGAAAGAATTTTTAAAAAATAAAAAAATTATTTTAATTTAATTTTTTTTTAATTTAAAAGTTTTATTTTTTTAAAA
TTATACAGGTAAATATTATC

Downstream 100 bases:

>100_bases
GTTTTTTCTTTTTTAATAATAAAATTTTTTATAATTTTAGAGAGGAAATAATAAATTCCTCTCTGAATATATATATGCAT
TAAATTTTTTTTAATAAAAA

Product: GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MVYKFGIIGLPNVGKSALFNKITKLNVPSKNFPFCTIKPNIGIISIFDNRLINISNNLSSKNIIYSCVKIIDIAGLVKGA
SLGEGLGNKFLENIRDCHAIIHVVRCFKNNNIIHIYNDINPIRDIDIINTELLFSDLNLCEKIFKKKSINNKIKNSNQYV
FLNLIKYCIKKLQQGYILRDLNFTQNELKILKQYRFLTLKPMIYVFNISNDITHNINLNIFLKNNNFIKSNFISISIENL
DTSKIYHVYYNKIIRKLCSMLDLCTFFTAGSKEARSWIFKKESTAKQVAKLIHTDFFRGFIRAQVISYDEFIKYGNLNII
RKLGRIRSEGKNYIVKDGDIINFLFNI

Sequences:

>Translated_347_residues
MVYKFGIIGLPNVGKSALFNKITKLNVPSKNFPFCTIKPNIGIISIFDNRLINISNNLSSKNIIYSCVKIIDIAGLVKGA
SLGEGLGNKFLENIRDCHAIIHVVRCFKNNNIIHIYNDINPIRDIDIINTELLFSDLNLCEKIFKKKSINNKIKNSNQYV
FLNLIKYCIKKLQQGYILRDLNFTQNELKILKQYRFLTLKPMIYVFNISNDITHNINLNIFLKNNNFIKSNFISISIENL
DTSKIYHVYYNKIIRKLCSMLDLCTFFTAGSKEARSWIFKKESTAKQVAKLIHTDFFRGFIRAQVISYDEFIKYGNLNII
RKLGRIRSEGKNYIVKDGDIINFLFNI
>Mature_347_residues
MVYKFGIIGLPNVGKSALFNKITKLNVPSKNFPFCTIKPNIGIISIFDNRLINISNNLSSKNIIYSCVKIIDIAGLVKGA
SLGEGLGNKFLENIRDCHAIIHVVRCFKNNNIIHIYNDINPIRDIDIINTELLFSDLNLCEKIFKKKSINNKIKNSNQYV
FLNLIKYCIKKLQQGYILRDLNFTQNELKILKQYRFLTLKPMIYVFNISNDITHNINLNIFLKNNNFIKSNFISISIENL
DTSKIYHVYYNKIIRKLCSMLDLCTFFTAGSKEARSWIFKKESTAKQVAKLIHTDFFRGFIRAQVISYDEFIKYGNLNII
RKLGRIRSEGKNYIVKDGDIINFLFNI

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=34.9593495934959, Blast_Score=225, Evalue=6e-59,
Organism=Homo sapiens, GI58761502, Length=184, Percent_Identity=32.6086956521739, Blast_Score=108, Evalue=5e-24,
Organism=Escherichia coli, GI1787454, Length=366, Percent_Identity=41.8032786885246, Blast_Score=311, Evalue=3e-86,
Organism=Escherichia coli, GI1789574, Length=134, Percent_Identity=27.6119402985075, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=369, Percent_Identity=34.1463414634146, Blast_Score=219, Evalue=2e-57,
Organism=Saccharomyces cerevisiae, GI6319499, Length=375, Percent_Identity=35.2, Blast_Score=202, Evalue=5e-53,
Organism=Saccharomyces cerevisiae, GI6321773, Length=381, Percent_Identity=32.5459317585302, Blast_Score=178, Evalue=1e-45,
Organism=Saccharomyces cerevisiae, GI6321649, Length=145, Percent_Identity=33.7931034482759, Blast_Score=76, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24640873, Length=370, Percent_Identity=35.1351351351351, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24640877, Length=370, Percent_Identity=35.1351351351351, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24640875, Length=370, Percent_Identity=35.1351351351351, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24640879, Length=330, Percent_Identity=32.4242424242424, Blast_Score=164, Evalue=9e-41,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 40213; Mature: 40213

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYKFGIIGLPNVGKSALFNKITKLNVPSKNFPFCTIKPNIGIISIFDNRLINISNNLSS
CEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCEEEECCCCCC
KNIIYSCVKIIDIAGLVKGASLGEGLGNKFLENIRDCHAIIHVVRCFKNNNIIHIYNDIN
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIRDIDIINTELLFSDLNLCEKIFKKKSINNKIKNSNQYVFLNLIKYCIKKLQQGYILRD
CCCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEHHHHHHHHHHHHHCCCEEEE
LNFTQNELKILKQYRFLTLKPMIYVFNISNDITHNINLNIFLKNNNFIKSNFISISIENL
CCCCHHHHHHHHHHHHEEECCEEEEEECCCCCEEEEEEEEEEECCCEEEECEEEEEEECC
DTSKIYHVYYNKIIRKLCSMLDLCTFFTAGSKEARSWIFKKESTAKQVAKLIHTDFFRGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IRAQVISYDEFIKYGNLNIIRKLGRIRSEGKNYIVKDGDIINFLFNI
HHHHHHCHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCEEEHEECC
>Mature Secondary Structure
MVYKFGIIGLPNVGKSALFNKITKLNVPSKNFPFCTIKPNIGIISIFDNRLINISNNLSS
CEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECCCEEEECCCCCC
KNIIYSCVKIIDIAGLVKGASLGEGLGNKFLENIRDCHAIIHVVRCFKNNNIIHIYNDIN
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PIRDIDIINTELLFSDLNLCEKIFKKKSINNKIKNSNQYVFLNLIKYCIKKLQQGYILRD
CCCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEHHHHHHHHHHHHHCCCEEEE
LNFTQNELKILKQYRFLTLKPMIYVFNISNDITHNINLNIFLKNNNFIKSNFISISIENL
CCCCHHHHHHHHHHHHEEECCEEEEEECCCCCEEEEEEEEEEECCCEEEECEEEEEEECC
DTSKIYHVYYNKIIRKLCSMLDLCTFFTAGSKEARSWIFKKESTAKQVAKLIHTDFFRGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IRAQVISYDEFIKYGNLNIIRKLGRIRSEGKNYIVKDGDIINFLFNI
HHHHHHCHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCEEEHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]