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The map label for this gene is ydhD [H]

Identifier: 116515061

GI number: 116515061

Start: 138114

End: 138425

Strand: Direct

Name: ydhD [H]

Synonym: BCc_121

Alternate gene names: 116515061

Gene position: 138114-138425 (Clockwise)

Preceding gene: 116515059

Following gene: 116515063

Centisome position: 33.17

GC content: 24.68

Gene sequence:

>312_bases
ATGATTAAAACTATCAAAAAAATAGAAAAACAATTACAAAATAACAATATTGTTTTATATATGAAAGGTTCTCCAGAACA
TCCTCATTGTGGTTTTTCAGCTCAAGCGGTTCAAGCTTTGTCATCTTGCACTTCAAATTTTTTTTATGTTGATGTTTTAA
AAAATCCTGATATTAGATCAGTATTACCTCAATATTCTAAATGGCCTACTTTCCCTCAATTATGGATTAATAAAAAATTA
ATTGGAGGTTGTGATATTATATTAGAAAAGTTTTACAATAAAGAATTGCTTGATTTAATTAAAAAAAAATAA

Upstream 100 bases:

>100_bases
AATAATAATTTTTATTATTATATAAAAATTTATATTTTCAAATATAAATAAAAAAAATTTTTTATTTATATCTTTAATAT
TTTTAAATGAGTATTTTAAT

Downstream 100 bases:

>100_bases
TATTTTTAAAAATAATTATAATTATTAATTTTAAAAAAAAATATTTTATATCTCATCGGTTTTTTTACGGTGAGATGAAT
TTGGCGGCCATCCTCCTAAT

Product: YdhD

Products: NA

Alternate protein names: Grx4; Monothiol glutaredoxin [H]

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MIKTIKKIEKQLQNNNIVLYMKGSPEHPHCGFSAQAVQALSSCTSNFFYVDVLKNPDIRSVLPQYSKWPTFPQLWINKKL
IGGCDIILEKFYNKELLDLIKKK

Sequences:

>Translated_103_residues
MIKTIKKIEKQLQNNNIVLYMKGSPEHPHCGFSAQAVQALSSCTSNFFYVDVLKNPDIRSVLPQYSKWPTFPQLWINKKL
IGGCDIILEKFYNKELLDLIKKK
>Mature_103_residues
MIKTIKKIEKQLQNNNIVLYMKGSPEHPHCGFSAQAVQALSSCTSNFFYVDVLKNPDIRSVLPQYSKWPTFPQLWINKKL
IGGCDIILEKFYNKELLDLIKKK

Specific function: Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters [H]

COG id: COG0278

COG function: function code O; Glutaredoxin-related protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutaredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI42516576, Length=98, Percent_Identity=35.7142857142857, Blast_Score=87, Evalue=4e-18,
Organism=Homo sapiens, GI95113651, Length=79, Percent_Identity=44.3037974683544, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787943, Length=102, Percent_Identity=59.8039215686275, Blast_Score=144, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71988153, Length=96, Percent_Identity=32.2916666666667, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71988159, Length=91, Percent_Identity=35.1648351648352, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17556042, Length=98, Percent_Identity=30.6122448979592, Blast_Score=73, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6325198, Length=100, Percent_Identity=40, Blast_Score=92, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6321022, Length=83, Percent_Identity=44.578313253012, Blast_Score=83, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6320303, Length=73, Percent_Identity=47.945205479452, Blast_Score=80, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24642023, Length=95, Percent_Identity=37.8947368421053, Blast_Score=87, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19921242, Length=85, Percent_Identity=37.6470588235294, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002109
- InterPro:   IPR014434
- InterPro:   IPR004480
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00462 Glutaredoxin [H]

EC number: NA

Molecular weight: Translated: 11929; Mature: 11929

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTIKKIEKQLQNNNIVLYMKGSPEHPHCGFSAQAVQALSSCTSNFFYVDVLKNPDIRS
CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHH
VLPQYSKWPTFPQLWINKKLIGGCDIILEKFYNKELLDLIKKK
HCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MIKTIKKIEKQLQNNNIVLYMKGSPEHPHCGFSAQAVQALSSCTSNFFYVDVLKNPDIRS
CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHH
VLPQYSKWPTFPQLWINKKLIGGCDIILEKFYNKELLDLIKKK
HCCHHHCCCCCHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]